PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G127900.1
Common NameB456_004G127900, LOC105791278
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 338aa    MW: 36662.8 Da    PI: 6.041
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G127900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-182272256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  Gorai.004G127900.1 22 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 72
                        689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5082279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-292279IPR001471AP2/ERF domain
PfamPF008472.4E-122271IPR001471AP2/ERF domain
SMARTSM003804.5E-362285IPR001471AP2/ERF domain
CDDcd000181.35E-172279No hitNo description
PRINTSPR003671.1E-72334IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-202379IPR016177DNA-binding domain
PRINTSPR003671.1E-74561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVIPTSADGV RGRKKSSRGH HRFVGVRQRP SGRWVAEIKD SLQKVRLWLG TFDTAEDAAR  60
AYDDAARALR GANARTNFEL PPSASKTTAN RVSLDNIEPF SFEEVCGTGN DADGFLGALK  120
AKLLDGKGIK VLSPANRAAL QPIVASNSSQ NNKNVSRESR TTTVAPQGIR NMNPVQGPLN  180
PGSSKPDLLN HDQVAANHIG VQWPQPQPGQ SQIESMASMM WSNEPSFEAE WGTQMNQVPP  240
NGFFNITTCT AAATSTWPLS GTTESTMDLS YSDQCPIELQ MNMNGKTNMV SMPMSQIDET  300
TEGVWPSHQQ FEQCDNNGWS SANGSWDPYL YVSSVLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1420781271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474746.10.0PREDICTED: uncharacterized protein LOC105791278
TrEMBLA0A0D2R3R80.0A0A0D2R3R8_GOSRA; Uncharacterized protein
STRINGGorai.004G127900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-16related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]