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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Gorai.004G123500.1 |
Common Name | B456_004G123500, LOC105791228 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HD-ZIP |
Protein Properties |
Length: 233aa MW: 26906.1 Da PI: 6.5256 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.004G123500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.4 | 6.5e-20 | 30 | 84 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++f++eq++ Le+ Fe++ ++ +++ +LA++lgL+ rqV +WFqNrRa++k
Gorai.004G123500.1 30 KQKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWK 84
56789*************************************************9 PP
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2 | HD-ZIP_I/II | 126 | 1.7e-40 | 31 | 122 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+krr+s+eq++lLE+ Fe+e+kLep++K++lareLglqprqva+WFqnrRAR+k+kq+E+dy++Lk++yd+l+++ e+L+ke+++L +++
Gorai.004G123500.1 31 QKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYNTLKANYDNLESRFESLKKEKHSLILQIQ 121
79************************************************************************************98887 PP
HD-ZIP_I/II 93 e 93
+
Gorai.004G123500.1 122 K 122
6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MEREYHPAAD EAIAEQAPQT PKNKKKNKMK QKRRFSDEQI RLLESIFESE TKLEPRKKMQ 60 LARELGLQPR QVAIWFQNRR ARWKSKQIEQ DYNTLKANYD NLESRFESLK KEKHSLILQI 120 QKLSELLEEP HKGGKGLDGS STGGGGGSEY GETKCETEVE AQPSFQHKEC LGLQTENERG 180 DIKQTGQGGE EFLIMDEYKN DSPASPDKFY GLHSVDMFDH SYTNCQWLNF WT*
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