PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 26906.1 Da PI: 6.5256

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G123500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.5e-20	30	84	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le+ Fe++ ++ +++ +LA++lgL+ rqV +WFqNrRa++k Gorai.004G123500.1 30 KQKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWK 84 56789*************************************************9 PP
2	HD-ZIP_I/II	126	1.7e-40	31	122	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +krr+s+eq++lLE+ Fe+e+kLep++K++lareLglqprqva+WFqnrRAR+k+kq+E+dy++Lk++yd+l+++ e+L+ke+++L +++ Gorai.004G123500.1 31 QKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYNTLKANYDNLESRFESLKKEKHSLILQIQ 121 79************************************************************************************98887 PP HD-ZIP_I/II 93 e 93 + Gorai.004G123500.1 122 K 122 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.77E-20	20	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.479	26	86	IPR001356	Homeobox domain
SMART	SM00389	2.2E-18	28	90	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-17	30	84	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-20	32	93	IPR009057	Homeodomain-like
CDD	cd00086	1.24E-15	33	87	No hit	No description
PRINTS	PR00031	4.3E-6	57	66	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	61	84	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.3E-6	66	82	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.7E-15	86	127	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEREYHPAAD EAIAEQAPQT PKNKKKNKMK QKRRFSDEQI RLLESIFESE TKLEPRKKMQ 60 LARELGLQPR QVAIWFQNRR ARWKSKQIEQ DYNTLKANYD NLESRFESLK KEKHSLILQI 120 QKLSELLEEP HKGGKGLDGS STGGGGGSEY GETKCETEVE AQPSFQHKEC LGLQTENERG 180 DIKQTGQGGE EFLIMDEYKN DSPASPDKFY GLHSVDMFDH SYTNCQWLNF WT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	86	RRARWKSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474657.1	1e-174	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A0D2RY48	1e-172	A0A0D2RY48_GOSRA; Uncharacterized protein
STRING	Gorai.004G123500.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18999	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	4e-45	homeobox 7

Link Out ? help Back to Top
Phytozome	Gorai.004G123500.1
Entrez Gene	105791228

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]