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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G117900.6 | ||||||||
Common Name | B456_004G117900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 623aa MW: 69697 Da PI: 7.0462 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 63 | 84 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Gorai.004G117900.6 63 KCDKCSREFCSPINYRRHIRVH 84 7********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0098 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 85 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MKSEEPNDSL DTFIRQAIGK EPLLSFSRAG DSSVQWIQLL HALDQQEIPG WPLLTPLKVQ 60 MQKCDKCSRE FCSPINYRRH IRVHHRLKKL DKDSAKNRDL LAAFWGKLSE DEAKEVVSFK 120 DVALEEVPGS SVIKSLTTLV KRPGFSALPQ VCLRAGSALL DLVQARPSRF PISSEELFSI 180 LDDASEGTFL CGAAVSMQKY IFDGEAGKIG LDTKNLVACT SFLVEQKLVK AWLADKDAEA 240 LRCQKLLVEE EEAAHKRQVE LLERKRQKKL RQKEQKAKEL RPWEMEEGKQ NMDDSLEDNT 300 PAETSSPKAV FDIDGQNAII STDQLLPALE PIPFPNPEEG VDYRVQTEFY NQYCEPGTSQ 360 NGERRVEQVD GCQRIVVARW KTPPKSQRVV LNGFHANQNS HGFKSGGTNK HETNRERIAA 420 MGNSNKMWSR KSKAIDDGDS LQIKAGKQAT NQPDQNKNPE LVIGSISVPL GKNLAETHDR 480 CPAECQTPKN NVQERFSKHD HVQIVANRST IKFWRPVSRQ ERKSSLPVQN GIKEVEVIAE 540 NDGVQISSNE SYRRSSAVDG SDGVLRMNLS STLEESVQPG GLQFDSNAAK AFLAESKLGC 600 LIYIYMRVCI GFITESIFTE CL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 262 | 269 | ERKRQKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588104 | 3e-97 | JX588104.1 Gossypium hirsutum clone NBRI_GE22433 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474557.1 | 0.0 | PREDICTED: uncharacterized protein LOC105791160 isoform X1 | ||||
TrEMBL | A0A0D2QW60 | 0.0 | A0A0D2QW60_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G117900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.2 | 1e-141 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G117900.6 |
Publications ? help Back to Top | |||
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