PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G117900.5
Common NameB456_004G117900, LOC105791160
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 670aa    MW: 74496.2 Da    PI: 8.1217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G117900.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-056384223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        kC +C++ F ++ n++rHir+H
  Gorai.004G117900.5 63 KCDKCSREFCSPINYRRHIRVH 84
                        7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00986284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1186289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806485IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKSEEPNDSL DTFIRQAIGK EPLLSFSRAG DSSVQWIQLL HALDQQEIPG WPLLTPLKVQ  60
MQKCDKCSRE FCSPINYRRH IRVHHRLKKL DKDSAKNRDL LAAFWGKLSE DEAKEVVSFK  120
DVALEEVPGS SVIKSLTTLV KRPGFSALPQ VCLRAGSALL DLVQARPSRF PISSEELFSI  180
LDDASEGTFL CGAAVSMQKY IFDGEAGKIG LDTKNLVACT SFLVEQKLVK AWLADKDAEA  240
LRCQKLLVEE EEAAHKRQVE LLERKRQKKL RQKEQKAKEL RPWEMEEGKQ NMDDSLEDNT  300
PAETSSPKAV FDIDGQNAII STDQLLPALE PIPFPNPEEG VDYRVQTEFY NQYCEPGTSQ  360
NGERRVEQVD GCQRIVVARW KTPPKSQRVV LNGFHANQNS HGFKSGGTNK HETNRERIAA  420
MGNSNKMWSR KSKAIDDGDS LQIKAGKQAT NQPDQNKNPE LVIGSISVPL GKNLAETHDR  480
CPAECQTPKN NVQERFSKHD HVQIVANRST IKFWRPVSRQ ERKSSLPVQN GIKEVEVIAE  540
NDGVQISSNE SYRRSSAVDG SDGVLRMNLS STLEESVQPG GLQFDSNAAK AFLAERWKEA  600
VAGEHVTLVL SSNPKPPGCS GVEIDSSEKW MVKAGACEAS TVGAAIAKYR TKPERGAKTK  660
YIPKQRSAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262269ERKRQKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5881047e-55JX588104.1 Gossypium hirsutum clone NBRI_GE22433 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474557.10.0PREDICTED: uncharacterized protein LOC105791160 isoform X1
TrEMBLA0A0D2RXL90.0A0A0D2RXL9_GOSRA; Uncharacterized protein
TrEMBLA0A0D2RXM40.0A0A0D2RXM4_GOSRA; Uncharacterized protein
STRINGGorai.004G117900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-157C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]