PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 419aa MW: 47087.4 Da PI: 4.8667

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G113000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	31.2	4.4e-10	16	61	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ + +k+++++C d++ +lC+ C ++ H+ H++v+l Gorai.004G113000.1 16 ARACDGCLQKRARWYCADDDAFLCQGCDTSVHSAnqlasrHERVSL 61 578*****************************66889999998875 PP
2	CCT	68.2	2.2e-23	362	405	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Gorai.004G113000.1 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 405 9*****************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.736	14	61	IPR000315	B-box-type zinc finger
SMART	SM00336	2.9E-11	14	61	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-8	16	61	IPR000315	B-box-type zinc finger
CDD	cd00021	4.56E-9	17	61	No hit	No description
PROSITE profile	PS51017	16.083	362	404	IPR010402	CCT domain
Pfam	PF06203	5.5E-18	362	404	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MITDKKAANV MGGKTARACD GCLQKRARWY CADDDAFLCQ GCDTSVHSAN QLASRHERVS 60 LQTASSNFNA SMHSTIDQDA PPAWHQGFTR KARTARQNKP MLGQQKGEGT VLALNPIDPF 120 VPEVGSEEGS VDENEEQLLC RVPVFDPFSE ELCNMVTSDC DEVATPNEDG NLVVDGYEHE 180 RTYELDDSLH GFLPSDLDLA NFAADVESLL GVRLDEDSCD IKKIESLDCT DENGSELFHE 240 RKIMKVEEEE EVEGITACFC ESAFEVTRAS LNWTFDYDSL IITEEEEKEI PVAKTKRNKL 300 LRLNYESVIT AWASQGSRTT GTRPELNPDD FMGSYPKDEH HQNGGIGGIN RPVRANNTDG 360 EREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFVGL GTAFPYTN*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MITDKKAANV MGGKTARACD GCLQKRARWY CADDDAFLCQ GCDTSVHSAN QLASRHERVS  60
LQTASSNFNA SMHSTIDQDA PPAWHQGFTR KARTARQNKP MLGQQKGEGT VLALNPIDPF  120
VPEVGSEEGS VDENEEQLLC RVPVFDPFSE ELCNMVTSDC DEVATPNEDG NLVVDGYEHE  180
RTYELDDSLH GFLPSDLDLA NFAADVESLL GVRLDEDSCD IKKIESLDCT DENGSELFHE  240
RKIMKVEEEE EVEGITACFC ESAFEVTRAS LNWTFDYDSL IITEEEEKEI PVAKTKRNKL  300
LRLNYESVIT AWASQGSRTT GTRPELNPDD FMGSYPKDEH HQNGGIGGIN RPVRANNTDG  360
EREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFVGL GTAFPYTN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	388	RRTRLFSKKIRYEVRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1196	0.0	flower\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48880659	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584534	2e-79	JX584534.1 Gossypium hirsutum clone NBRI_GE17865 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474459.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBL	A0A0D2MWT9	0.0	A0A0D2MWT9_GOSRA; Uncharacterized protein
STRING	Gorai.004G113000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16600	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-86	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Gorai.004G113000.1
Entrez Gene	105791098

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]