PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G073400.1 | ||||||||
Common Name | B456_004G073400, LOC105790648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22528.5 Da PI: 7.1114 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.4 | 6.6e-40 | 14 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkCa+dCv+apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeAear+rdPvyG+v++i++lqqq+++l Gorai.004G073400.1 14 PCGACKFLRRKCASDCVFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAEARIRDPVYGCVAHIFALQQQVACL 104 7*************************99*************************************************************** PP DUF260 91 kaelallkee 100 +a+l ++k++ Gorai.004G073400.1 105 QAQLMQIKAQ 114 ****999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.914 | 13 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-38 | 14 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MASSSSSTTG TGSPCGACKF LRRKCASDCV FAPYFCSEQG PARFAAIHKV FGASNVSKLL 60 LHIPAHDRCE AVVTIAYEAE ARIRDPVYGC VAHIFALQQQ VACLQAQLMQ IKAQLAQNDM 120 NSSHNIVENQ WQENLSGTVP SYMNPISPQS SLESVELNSG DSVNLQEIQS RHEEFCFQGY 180 HKKRLNNNSD LGELQTLALR MMRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-40 | 4 | 108 | 1 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-40 | 4 | 108 | 1 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During lateral root formation, expressed in the lateral root primordia, and the developing, emerged, and mature lateral roots. {ECO:0000269|PubMed:19717544}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and faintly in shoots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012473810.1 | 1e-153 | PREDICTED: LOB domain-containing protein 16-like isoform X1 | ||||
Refseq | XP_016703832.1 | 1e-153 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 1e-78 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A0D2RUW5 | 1e-151 | A0A0D2RUW5_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8KN03 | 1e-151 | A0A1U8KN03_GOSHI; LOB domain-containing protein 16-like | ||||
TrEMBL | A0A2P5RF15 | 1e-151 | A0A2P5RF15_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G073400.1 | 1e-152 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-64 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G073400.1 |
Entrez Gene | 105790648 |