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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.004G070800.1 |
Common Name | B456_004G070800, LOC105790624 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
ERF |
Protein Properties |
Length: 235aa MW: 26306.2 Da PI: 4.8696 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.004G070800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60 | 5.4e-19 | 100 | 150 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g ++AeIrdp+ ng +r++lg++ t+e+Aa a+++a+ +++g+
Gorai.004G070800.1 100 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRAAFNMRGA 150
9*******.**********98776..*************************995 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MYCDSASDFD LSLLDSIRQY LLEDDCDTIP GQVVENLPKT ELHEDAINVD QWINFDQSFD 60 AAEETVAVNN ASFPSFEVNF QMETTAAVPK SHAPPKEVNY RGVRRRPWGT YAAEIRDPKR 120 NGARIWLGTY ETPEGAALAY DRAAFNMRGA KAKLNFPHLI GSNQVEPVRV SSNKRRSPKP 180 SSSCSSAQSP SSTWDDGTPK SKQMRSEKYS SVKTEFEVDM YQLIPTEFCQ TINC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX586436 | 6e-56 | JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G44840.1 | 1e-41 | ethylene-responsive element binding factor 13 |