PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 175aa MW: 20049 Da PI: 8.9909

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G069500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	33	1.2e-10	143	164	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk+s +pr Gorai.004G069500.2 143 LDDGYKWRKYGQKVVKNSLHPR 164 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-12	128	164	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-10	135	165	IPR003657	WRKY domain
PROSITE profile	PS50811	12.771	138	164	IPR003657	WRKY domain
SMART	SM00774	0.0017	143	174	IPR003657	WRKY domain
Pfam	PF03106	7.4E-7	144	164	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEGERGVSNY EIQVSFSTTQ AIHEMGFVQY EENQMMSFMA PAQSSHHHHH HQTSQPLNNA 60 TIGNSSTTNS TTTVAFGLNN QVGRTLDPKA VEGENYSSNI NDRNNNSWWR RSASEKGNLN 120 NKVRRKLREP RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRWQELLS VYAE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	127	KVRRKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583829	2e-86	JX583829.1 Gossypium hirsutum clone NBRI_GE16973 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473762.1	1e-130	PREDICTED: probable WRKY transcription factor 12 isoform X2
Swissprot	Q93WY4	5e-35	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A0D2R0D3	1e-128	A0A0D2R0D3_GOSRA; Uncharacterized protein
STRING	Gorai.004G069500.1	1e-120	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	3e-27	WRKY family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G069500.2
Entrez Gene	105790608

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]