PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G039900.1
Common NameB456_004G039900, LOC105793515
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 455aa    MW: 50550.9 Da    PI: 7.7724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G039900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0018097219
                        EETTTTEEESSHHHHHHH CS
             zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                        +C++Cg+ Fs++ ++  H
  Gorai.004G039900.1 80 VCENCGEEFSSWKSFLEH 97
                        6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.8931IPR015880Zinc finger, C2H2-like
PfamPF139120.00451031IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003552707999IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076206233IPR007087Zinc finger, C2H2
SMARTSM003550.13206228IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-9206230IPR007087Zinc finger, C2H2
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
SuperFamilySSF576676.57E-5289314No hitNo description
PfamPF139125.1E-13290314IPR007087Zinc finger, C2H2
SMARTSM003550.44291313IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369291313IPR007087Zinc finger, C2H2
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDQRSSYKHF CRICKKGFGC GRALGGHMRA HGIGDESWSI EDDDVVSGWE VEKLGGDSPL  60
NNKRMYSLRT NPNRLKSCRV CENCGEEFSS WKSFLEHGKC GYDAAESLVS SPGSGGGWSK  120
RKRSMRAEMG HFNSEEEELA NCLMMLSNAT VVREVEVDIE AEAEESCASA SKEDEMIIKR  180
KNNTMNFIAP IACRVPMDHN KPKGLFECKA CKKVFNSHQA LGGHRASHKK VKGCFAARLD  240
HFDKTQQVDE DHDVITHEEL LPTKSTSHIQ LDQGTSTPFA ASTSKKKLKV HECSICHRVF  300
SSGQALGGHK RCHWVTSNSP DTSSLTKFHR FQDQTAHIRQ KPKLNIDQSL DLKLDLNLPA  360
TTDLDLVRRN HVNPYLQPFT GIDPKEKTTI NNQNQLQVDA IDRKKSDFNS SCLQNADDEA  420
DSKVKLAKLC ELKGINVSGG SSSPWLQVGI SSDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477869.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A0D2MTD60.0A0A0D2MTD6_GOSRA; Uncharacterized protein
STRINGGorai.004G039900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-30C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]