PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G037500.1
Common NameB456_004G037500, LOC105790295
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 711aa    MW: 77265.5 Da    PI: 6.8784
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G037500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07293313526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Gorai.004G037500.1 293 PCPDFRK-GACRRGDMCEYAHG 313
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.91E-1816150IPR020683Ankyrin repeat-containing domain
CDDcd002048.99E-1817148No hitNo description
Gene3DG3DSA:1.25.40.208.6E-2020171IPR020683Ankyrin repeat-containing domain
SMARTSM002486802252IPR002110Ankyrin repeat
PfamPF127964.5E-1028137IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.91669171IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.00369101IPR002110Ankyrin repeat
SMARTSM002480.00266998IPR002110Ankyrin repeat
PRINTSPR014153.2E-57085IPR002110Ankyrin repeat
PROSITE profilePS5008812.235103138IPR002110Ankyrin repeat
SMARTSM002480.0091103135IPR002110Ankyrin repeat
PRINTSPR014153.2E-5122136IPR002110Ankyrin repeat
SMARTSM003564.0E-6288314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4292315IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5293313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582293315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4321351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MCVGPEHSKS GDMNHLNVKT EDSFSSLHEL ASNNDVEGIK QSIEKDVSSI DEVGLWYCRE  60
KGSNRIVAKH RTPLMVAATY GSVDVVKLIL THSEAVNLSC GTDKSTALHC AASGGSLHAM  120
DVVNLLLSAG ADTNSSDANG CRPADVVVVH PKLQSMRAVM EELLSGHVSD DPFGKQNLRI  180
SIDNSTSGLP PLSSSPENRS SPSPSHLASS PMASKFVDIP VNSTTERKEY PVDPSLPDIK  240
NSVYAADEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG  300
ACRRGDMCEY AHGVFECWLH PAQYRTRMCK DGTSCDRRVC FFAHTAEELR PLYVSTGSAV  360
PSPRSSASAA SVMDMAAVMG LLPGSPSSVS ALSPSPFNQP MSPSANGLSH SSAAWPQPNV  420
PTLHLPGSNF QSSRLRSSLS ARDIPCEGFD MWPDFDAHEQ ILNDLTCVSQ SHNSPVSVSR  480
SCRSKTLTPS NLEELFSAEI SSSPRYTDQS AASTIFSPTH KSAVLNQFQQ QQSKLSPINT  540
SVFAPRNVEH PLLQASFGVR SPGRMSPRST EPISPMAARL SAHVQLEKQR QQQLSCLSSR  600
ELGSPVNSPW SKWGSPNGKL NWSVSADELG QLRKSSYELR NSSEGPDLSW GQSLVKESPP  660
EMMKEKLVAP APHGASSGDI SNDSNSQINS VDHSVLGAWI EQMQLDQLVV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473266.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_012473267.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0D2P6C40.0A0A0D2P6C4_GOSRA; Uncharacterized protein
STRINGGorai.004G037500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]