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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.004G036900.2 |
| Common Name | B456_004G036900, LOC105790287 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
C3H |
| Protein Properties |
Length: 365aa MW: 40355.7 Da PI: 7.5218 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.004G036900.2 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 25.8 | 1.8e-08 | 36 | 56 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C ++++ G+C+yG++C++ H+
Gorai.004G036900.2 36 ICTYYQK-GICSYGSQCRYEHV 56
7******.***********997 PP
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| 2 | zf-CCCH | 19.7 | 1.5e-06 | 146 | 167 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C+ fa+ G C++Gd+C+ +Hg
Gorai.004G036900.2 146 PICS-FAAAGNCPRGDNCPHIHG 167
5788.**************9998 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 9.9E-5 | 2 | 30 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.3E-6 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.727 | 3 | 30 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-7 | 4 | 28 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.633 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-4 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.26E-5 | 34 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.8E-6 | 36 | 56 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 36 | 55 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.727 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0036 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 148 | 167 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 1.88E-13 | 199 | 275 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 6.7E-10 | 205 | 270 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 4.67E-4 | 210 | 270 | No hit | No description |
| PROSITE profile | PS50089 | 12.238 | 211 | 269 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 2.8E-7 | 211 | 268 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 3.5E-7 | 211 | 268 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 235 | 244 | IPR017907 | Zinc finger, RING-type, conserved site |
| SMART | SM00356 | 0.37 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.929 | 298 | 327 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MPKTKGVLCK FFAHGACFKG ENCEFSHDWK DPPNNICTYY QKGICSYGSQ CRYEHVKASQ 60
TDLSASSSST KPRQFGVSGS APLGPSTSTY CGSVVLPATS GEFPGSNGGF LPPSTNQAWH 120
LESGQQDLLD DGDVLQPRSA NLVELPICSF AAAGNCPRGD NCPHIHGDLC PTCGKHCLHP 180
FRAEEREEHV KMCEKKQKHL EALKYSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC 240
ISCIRNWRSS SPSSGMDVNT ALRACPICRK LSYFVIPSVI WYSTPEEKQE IIDSYKAKLR 300
SIDCKHFNFG NGNCPFGTSC FYKHAYRDGR LEEVALRHLG AEDGHTVIAK NIRLLDFLSD 360
LHIR*
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