PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G035800.1

Common Name

B456_004G035800, LOC105790277

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 340aa MW: 37946.4 Da PI: 8.1309

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G035800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	279	324	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l P+ +k + a++L +AveYIk+Lq Gorai.004G035800.1 279 SIAERMRRTRISERMRKLQGLFPNI----DKQTNTADMLDMAVEYIKDLQ 324 689*******************5....588***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.018	273	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-15	276	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.50E-10	277	328	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	278	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	279	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-10	279	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
METADYYYLQ QNQQQSCGLM RYRSMPAENR VGYDEYGSDF RSSSSSEMET LFMLCGNGSS 60 GNVSEYEEKS VKQEEEMMYQ IQSLPLENVE SSFGVGTNLG LENSMQRNGN GSNLVRQTSS 120 PSQVFSSHGL DNGFNATRKM TTLRACNGIN GEPTSTGRLY NHISFSSGPM PQIAQVENGG 180 LASNGNGRNG MNFIPNLMSD SRNNASLSGL KRARERDSDL LSGLSRLQTR NQDCRDCSTA 240 LTHQLSLPTT YEEVDVWQFQ SSVPCKIRAK RGCATHPRSI AERMRRTRIS ERMRKLQGLF 300 PNIDKQTNTA DMLDMAVEYI KDLQKQVKIL RDTKAKCSC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX579285	1e-131	JX579285.1 Gossypium hirsutum clone NBRI_GE11491 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473239.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	A0A0D2MT34	0.0	A0A0D2MT34_GOSRA; Uncharacterized protein
STRING	Gorai.004G035800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16737	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G035800.1
Entrez Gene	105790277

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]