PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

RAV

Protein Properties

Length: 351aa MW: 39616.2 Da PI: 8.9435

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G018300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26	2.3e-08	38	81	4	53
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 kG+ ++g W A+I+ + +r++lg+f +++eAa a++ a+ l Gorai.004G018300.1 38 KGIA-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAALAYDSAAIGL 81 6664.344788**999......44******************99755 PP
2	B3	84	1.4e-26	151	247	1	84
EEEE-..-HHHHTT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+ltpsdv+k++rlv+pkk+a +h + e+++l+++d+s + W+++++y+k+s+++v+t+GW++Fvk+++Lk Gorai.004G018300.1 151 FQKELTPSDVGKLNRLVIPKKHAVKHfphiendhqtfttA---NggcEDVELVFYDTSMKMWRFRYCYCKSSQSFVFTRGWNRFVKDKKLK 238 99***********************9887655555551...0555899************************************* PP TT-EEEEEE CS B3 76 egDfvvFkl 84 e+D + F+ Gorai.004G018300.1 239 EKDAIAFYT 247 *****93 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.71E-19	35	93	No hit	No description
SMART	SM00380	8.7E-15	36	97	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-14	36	92	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.764	36	91	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-12	37	93	IPR016177	DNA-binding domain
Gene3D	G3DSA:2.40.330.10	4.0E-31	148	251	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-27	150	250	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.15E-24	150	246	No hit	No description
SMART	SM01019	9.6E-18	151	257	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.66	151	269	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.2E-24	151	247	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MAATKTSRSG GGSGGDDYMF RASKRLKTET SGGLARFKGI APQQNGHWGA QIYANHQRIW 60 LGTFKSENEA ALAYDSAAIG LRIGDPHRNF PWSYDNIQEP NFQNLHTTRD ILNMIKSGSY 120 QSKYADYTKS SANHNKNTIH NDTKFACQQL FQKELTPSDV GKLNRLVIPK KHAVKHFPHI 180 ENDHQTFTTA NGGCEDVELV FYDTSMKMWR FRYCYCKSSQ SFVFTRGWNR FVKDKKLKEK 240 DAIAFYTCEC TGEIEHGRGF FLIDVNYNGG DDENGGRIDV FKRLGSSSVL RHHQGELHVG 300 LELNLGTNFY CNLDEKHNEN GEEQGLSGLK SSSSHSVKEK RITLFGARIN *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MAATKTSRSG GGSGGDDYMF RASKRLKTET SGGLARFKGI APQQNGHWGA QIYANHQRIW  60
LGTFKSENEA ALAYDSAAIG LRIGDPHRNF PWSYDNIQEP NFQNLHTTRD ILNMIKSGSY  120
QSKYADYTKS SANHNKNTIH NDTKFACQQL FQKELTPSDV GKLNRLVIPK KHAVKHFPHI  180
ENDHQTFTTA NGGCEDVELV FYDTSMKMWR FRYCYCKSSQ SFVFTRGWNR FVKDKKLKEK  240
DAIAFYTCEC TGEIEHGRGF FLIDVNYNGG DDENGGRIDV FKRLGSSSVL RHHQGELHVG  300
LELNLGTNFY CNLDEKHNEN GEEQGLSGLK SSSSHSVKEK RITLFGARIN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	1e-28	147	245	10	100	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472976.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
Swissprot	Q9C6P5	1e-95	RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBL	A0A0D2QXJ0	0.0	A0A0D2QXJ0_GOSRA; Uncharacterized protein
STRING	Gorai.004G018300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24526	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-97	RAV family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G018300.1
Entrez Gene	105790106

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]