PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G018300.1
Common NameB456_004G018300, LOC105790106
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 351aa    MW: 39616.2 Da    PI: 8.9435
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G018300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2262.3e-083881453
                 AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
                        kG+    ++g W A+I+       + +r++lg+f +++eAa a++ a+  l
  Gorai.004G018300.1 38 KGIA-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAALAYDSAAIGL 81
                        6664.344788****999......44********************99755 PP
2B3841.4e-26151247184
                         EEEE-..-HHHHTT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                         f+k+ltpsdv+k++rlv+pkk+a +h                 +   e+++l+++d+s + W+++++y+k+s+++v+t+GW++Fvk+++Lk
  Gorai.004G018300.1 151 FQKELTPSDVGKLNRLVIPKKHAVKHfphiendhqtfttA---NggcEDVELVFYDTSMKMWRFRYCYCKSSQSFVFTRGWNRFVKDKKLK 238
                         99*************************9887655555551...0555899***************************************** PP

                         TT-EEEEEE CS
                  B3  76 egDfvvFkl 84 
                         e+D + F+ 
  Gorai.004G018300.1 239 EKDAIAFYT 247
                         *******93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-193593No hitNo description
SMARTSM003808.7E-153697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-143692IPR001471AP2/ERF domain
PROSITE profilePS5103215.7643691IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-123793IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.104.0E-31148251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-27150250IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-24150246No hitNo description
SMARTSM010199.6E-18151257IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66151269IPR003340B3 DNA binding domain
PfamPF023628.2E-24151247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAATKTSRSG GGSGGDDYMF RASKRLKTET SGGLARFKGI APQQNGHWGA QIYANHQRIW  60
LGTFKSENEA ALAYDSAAIG LRIGDPHRNF PWSYDNIQEP NFQNLHTTRD ILNMIKSGSY  120
QSKYADYTKS SANHNKNTIH NDTKFACQQL FQKELTPSDV GKLNRLVIPK KHAVKHFPHI  180
ENDHQTFTTA NGGCEDVELV FYDTSMKMWR FRYCYCKSSQ SFVFTRGWNR FVKDKKLKEK  240
DAIAFYTCEC TGEIEHGRGF FLIDVNYNGG DDENGGRIDV FKRLGSSSVL RHHQGELHVG  300
LELNLGTNFY CNLDEKHNEN GEEQGLSGLK SSSSHSVKEK RITLFGARIN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2814724510100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472976.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-95RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0D2QXJ00.0A0A0D2QXJ0_GOSRA; Uncharacterized protein
STRINGGorai.004G018300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2452634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-97RAV family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]