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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.004G014800.1 |
| Common Name | B456_004G014800, LOC105790071 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
SRS |
| Protein Properties |
Length: 434aa MW: 45036.2 Da PI: 8.5523 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.004G014800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 219.6 | 6.7e-68 | 220 | 380 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92
s +a+CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq + aaa++ a s+ +++ +k++r +++++++s+t++s
Gorai.004G014800.1 220 SSGATCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMSAAATTAGAGSSgSTSGAKKPRL-VTSQTTTTSHTSTS 309
56789**********************************************9999998887777746666777776.588999999***** PP
DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+++++++++tss lP +v+++avf+cvrv++v+ ge+e+aYq++v+igGhvfkG+LydqG+e
Gorai.004G014800.1 310 NTTPPRSFDTSSshqdvglketLPGQVRAPAVFKCVRVTAVEGGEDEYAYQAVVKIGGHVFKGFLYDQGVE 380
**********999********************************************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 434 aa
Download sequence Send
to blast |
MVRKDFFFYY KGRKIYFCYF FVVVIVATTR GQLPSDTGGT FADWATSSST AIRAGPDDLL 60
SLGFNPNAAS PAATAAAPAQ WPPSARPINN GLAGPEMGMV GLRDFVVVAP AASFNHHHHH 120
HHHHTQDPIM VNEQINGPSS AAAAVTALGV GVIPLLTAAP CLPPQNVEDT GKFSGIQLWQ 180
NQSSSHYLKK PASFLDNSNP SMMAGDGGGM GGGSGGSGSS SGATCQDCGN QAKKDCTHRR 240
CRTCCKSRGF DCPTHVKSTW VPAARRRERQ LMSAAATTAG AGSSGSTSGA KKPRLVTSQT 300
TTTSHTSTSN TTPPRSFDTS SSHQDVGLKE TLPGQVRAPA VFKCVRVTAV EGGEDEYAYQ 360
AVVKIGGHVF KGFLYDQGVE GRDGFPNISE LHLGGGGRNA GSSSSPGLDP SDVYAATGGG 420
FLGGGLGYGN PIN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ393523 | 1e-119 | GQ393523.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0488 SSR marker CGR5515 genomic sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.4 | 5e-81 | Lateral root primordium (LRP) protein-related |
