PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G014300.1
Common NameB456_004G014300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 318aa    MW: 34721.7 Da    PI: 8.8651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G014300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000396385123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++Cp C+k F++   L  H r H
  Gorai.004G014300.1 63 HVCPVCSKGFTSGKALGGHVRIH 85
                        79***************999998 PP
2zf-C2H2157.3e-05138159223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C +C+k F++  +L  H+r+H
  Gorai.004G014300.1 138 SCCICKKDFKSLKSLFGHMRNH 159
                         6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.7E-86385No hitNo description
Gene3DG3DSA:3.30.160.602.2E-46386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.3E-86387IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9936390IPR007087Zinc finger, C2H2
SMARTSM003550.0236385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576677.7E-8132159No hitNo description
SMARTSM003550.21137159IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-6139161IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDDQVTNTME KGSVSIETSD SVPLKPNNNK LMVKLKISKK SYGGSGGGGG GGGGGGGDGG  60
DQHVCPVCSK GFTSGKALGG HVRIHMKANK NGGRYKKISK RQPRNNNNNN IRKKIPIMAA  120
VAAAETPHES HGSEEKVSCC ICKKDFKSLK SLFGHMRNHP ERNWRGIRPP PSDRNSCCSS  180
VSENDEAVVV DQIKGSASDL LKSLPKWTTT TKRFEKSTRS DHANNTDADT DTDTEDEITE  240
AAYCLMKLSR GNSFEIDNTK IHKTPLKTSF YTKNPKTTPL KEEAKQYYTK NNKTQQLDFD  300
LNEPYIGEDS DDSDSEV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157231e-139JX615723.1 Gossypium hirsutum clone NBRI_GE59867 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477443.10.0PREDICTED: uncharacterized protein LOC105793046
TrEMBLA0A0D2QPY30.0A0A0D2QPY3_GOSRA; Uncharacterized protein
STRINGGorai.004G014300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-21C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]