PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G012800.1
Common NameB456_004G012800, LOC105790049
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 204aa    MW: 22006.1 Da    PI: 5.2145
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G012800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.7e-43371361100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+lapyfp ++p+kf n+h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+
  Gorai.004G012800.1  37 PCAACKILRRRCADKCMLAPYFPPTEPAKFTNAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQ 127
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         a+la++++e
  Gorai.004G012800.1 128 AQLAKAQAE 136
                         ****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.20936137IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4337134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MFKMECREAT PSAVASPNSS NPSSPSTPTS PPVVISPCAA CKILRRRCAD KCMLAPYFPP  60
TEPAKFTNAH RVFGASNIIK FLQELPESQR ADAVSSMVYE ASARIRDPVY GCAGAICQLQ  120
KQVNELQAQL AKAQAEVVNM QLQQANLVGA LLCMEATAPP PQPHPQQLAV DTFMCSPQSY  180
HSNPGFIDDD DDNNNLGSLW EPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-43231391113LOB family transfactor Ramosa2.1
5ly0_B3e-43231391113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472898.11e-149PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK082e-73LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0D2MRZ91e-148A0A0D2MRZ9_GOSRA; Uncharacterized protein
STRINGGorai.004G012800.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-61LOB domain-containing protein 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]