PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G007300.1
Common NameB456_004G007300, LOC105789994
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 667aa    MW: 72861.6 Da    PI: 7.7434
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G007300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07262282526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ +++ G Ck Gd+C +aHg
  Gorai.004G007300.1 262 PCPEYRK-GSCKQGDSCEYAHG 282
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.6E-1615165IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-1435139IPR020683Ankyrin repeat-containing domain
PfamPF127961.4E-855128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0315989IPR002110Ankyrin repeat
PROSITE profilePS5029713.89459134IPR020683Ankyrin repeat-containing domain
CDDcd002048.18E-1461154No hitNo description
PROSITE profilePS5008810.52694129IPR002110Ankyrin repeat
SMARTSM002480.007594126IPR002110Ankyrin repeat
SMARTSM003562.3E-5257283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065257284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5258283IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4262282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4289320IPR000571Zinc finger, CCCH-type
SMARTSM0035617292315IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202292316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MGKSTQTGGA TQNFSDLLEL SASNDLISFR IAIEEEGHDI DEPSLWYGRR IGTKKMGFEE  60
RTPLMIASIF GCKDVVNYII KSGQVDVNRA CGSDGARALH CAAAGGSSGS PEIVKILLHA  120
CADINSVDAN GNRPGDLIAP ASCNSDCSSR KKLLEALLKS NVDGREGFPF RVGNEMDVSE  180
VQVNSIHRVW KDGNEKKEYP YDLTLPDIKN GMYGTDEFRM YTFKIQPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYAYSC VPCPEYRKGS CKQGDSCEYA HGIFESWLHP AQYRTRLCKD  300
ETNCNRRVCF FAHKPEELRP LYASTGSALP SPRSYSGSGI EFGSMSPLAP ASPSVIKPST  360
STPPLTPTGT NSIGGSMWPN QSSIVPPTLQ LPFSRLKAAR TARGKDLNMD KLNLETHRRF  420
QQQQQQLEQS PTSWNNPLSG ELNRFGGVKS TSLDDIFGSL DSAKPQLQGL PLEAASPQLQ  480
SPTGVPKWQN LNQQLRASYP TNLASSPIMM SPTFGVETSG PTAASSLSSK RSPSVIERPA  540
GNRNSGFSTP ASPVGAMPPN LSDWGSVDGK LDWGIQGEEL KKLRKSASLV FLNNGSNLSN  600
TTRSLSSTSE EPEASRVQPD MNGGTHSAGQ VRPEDQKQQK CRNTGNSDML IAWMEQLYKD  660
QDQILN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472812.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0D2QPL40.0A0A0D2QPL4_GOSRA; Uncharacterized protein
STRINGGorai.004G007300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]