PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G005200.1

Common Name

B456_004G005200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 563aa MW: 63634.3 Da PI: 6.7081

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G005200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	324.5	2.2e-99	198	558	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 e L++cA+ v+ +d++ a+++L+ +++++s+ gd +qR a+ f++AL +rla+++ l+ + +++++ +++l+a+ +++ ++P+ k+ Gorai.004G005200.1 198 ESLTQCAQSVAVNDQRTANEMLKLIRQHSSEFGDGTQRSAHDFANALTTRLAGMGAPLFF--AHLLSNRTSAADALKAYGVYVLACPFKKM 286 689************************************************9998884..4444444569*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 s++ aN+ I+e +e+++++HiiDf+i +G+QWp+L+q L+++++gp +lRiTg +s +++ + + ++e+++v f+ nv +ak Gorai.004G005200.1 287 SNFYANKRIMELAEKATTLHIIDFGICYGFQWPCLIQLLSAQAGGPSKLRITGSSS--------HNQVSDLQKGYCERFNVLFKCNV-IAK 368 *************************************************999........5677777789********9.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 ++e+++leeL++ ++E+++Vn++++l++l+d++vs +s+r++vLkl++s++P+++++ + +n++ F+ rf +al ++sa fd +ea++ Gorai.004G005200.1 369 KWETIQLEELKITKDEVVVVNCMHRLKNLPDDTVSPTSARETVLKLIRSINPELFIHGVANGTYNAPFFFSRFRKALFHFSAQFDIFEATV 459 ***************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 ++++ +r++ E+e+ gr+i+n+vaceg+er+er et+++W+ r + GFk+vpl+++ +k++ +++ + + + v+ + +++++gWk+r Gorai.004G005200.1 460 AQDDPQRMMFEKEIHGRDIMNLVACEGTERVERPETYKQWQVRTLRTGFKQVPLNQELVKKVMDMVQSSYHRDFVVDVDGHWMLQGWKGRI 550 ******************************************************************999************** PP GRAS 367 LvsvSaWr 374 ++++S+W+ Gorai.004G005200.1 551 IYALSCWK 558 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.398	170	538	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.5E-97	198	558	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MYGFKFDHGS VPMPVYANHN LDNGSKESPI DSSSSSPSSG MSSDSPFPNA MLKYINQMLM 60 EEDLEEKTCM LQDCLALQAA ERSFYEVLCH NYPIPAGLNH YYPDDDCNSS KGTIERLGEG 120 SISPSVDVDK VRGRKNYQRE DVEEGRINKQ LALSLDDSEQ TEMFDDVLLC KGENEDSPKC 180 SLNGNSAQHR QIKRGFMESL TQCAQSVAVN DQRTANEMLK LIRQHSSEFG DGTQRSAHDF 240 ANALTTRLAG MGAPLFFAHL LSNRTSAADA LKAYGVYVLA CPFKKMSNFY ANKRIMELAE 300 KATTLHIIDF GICYGFQWPC LIQLLSAQAG GPSKLRITGS SSHNQVSDLQ KGYCERFNVL 360 FKCNVIAKKW ETIQLEELKI TKDEVVVVNC MHRLKNLPDD TVSPTSARET VLKLIRSINP 420 ELFIHGVANG TYNAPFFFSR FRKALFHFSA QFDIFEATVA QDDPQRMMFE KEIHGRDIMN 480 LVACEGTERV ERPETYKQWQ VRTLRTGFKQ VPLNQELVKK VMDMVQSSYH RDFVVDVDGH 540 WMLQGWKGRI IYALSCWKPV KN*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MYGFKFDHGS VPMPVYANHN LDNGSKESPI DSSSSSPSSG MSSDSPFPNA MLKYINQMLM  60
EEDLEEKTCM LQDCLALQAA ERSFYEVLCH NYPIPAGLNH YYPDDDCNSS KGTIERLGEG  120
SISPSVDVDK VRGRKNYQRE DVEEGRINKQ LALSLDDSEQ TEMFDDVLLC KGENEDSPKC  180
SLNGNSAQHR QIKRGFMESL TQCAQSVAVN DQRTANEMLK LIRQHSSEFG DGTQRSAHDF  240
ANALTTRLAG MGAPLFFAHL LSNRTSAADA LKAYGVYVLA CPFKKMSNFY ANKRIMELAE  300
KATTLHIIDF GICYGFQWPC LIQLLSAQAG GPSKLRITGS SSHNQVSDLQ KGYCERFNVL  360
FKCNVIAKKW ETIQLEELKI TKDEVVVVNC MHRLKNLPDD TVSPTSARET VLKLIRSINP  420
ELFIHGVANG TYNAPFFFSR FRKALFHFSA QFDIFEATVA QDDPQRMMFE KEIHGRDIMN  480
LVACEGTERV ERPETYKQWQ VRTLRTGFKQ VPLNQELVKK VMDMVQSSYH RDFVVDVDGH  540
WMLQGWKGRI IYALSCWKPV KN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-39	196	558	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016743824.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A0D2MRP2	0.0	A0A0D2MRP2_GOSRA; Uncharacterized protein
STRING	Gorai.004G005200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	1e-161	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G005200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]