PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G170700.1
Common NameB456_003G170700, LOC105789245
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 628aa    MW: 70421.3 Da    PI: 5.2327
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G170700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.31.7e-972666262374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++L ++Ae+v++g+++ aq +Larl++l sp g+++qR+ +yf+eAL+  l+       ++  +++ ++ +++ ++ a+k+fsevsP+++
  Gorai.003G170700.1 266 LDQLCKVAEMVETGNFSHAQGILARLNHL-SPVGKTFQRIGFYFKEALQLLLLM----YNNTPVSKNPTPFDVIFKMGAYKVFSEVSPFVQ 351
                         679************************98.799********************8....33344555666667******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         f ++t Nqa lea+e+++r+Hi+Dfdi+ G+QW++++q+L  R++g  pslRiT+++s ++ +  el  ++e+L++fA+ +gv+fe +vl 
  Gorai.003G170700.1 352 FVNFTSNQAFLEALENSDRIHIVDFDIGFGAQWASFMQELPMRSKGvVPSLRITAFVSLSTYHPIELGLIRENLEQFANGIGVNFELEVLN 442
                         ********************************************55389*********9999***************************96 PP

                GRAS 183 akrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          + l++   +l ++r++++EalaVn+ +   +    +  l    +++L++vk+l+Pk+vv  ++ +d+n+ sF +++++a++ y +l++sl
  Gorai.003G170700.1 443 FDCLDQNpySLPMFRMNENEALAVNFPVWSASYR--PSIL----PNLLRIVKQLRPKIVVSLDRGCDRNDLSFPQHIINAFYSYISLLESL 527
                         665554344777889999*********9776665..4444....56********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +a +  +s++ +k+Er+l+ ++i+  v  +  +     e++  W+  + +aGF+p+++s+++++qa++++++ +++g+++e+ ++slvl+W
  Gorai.003G170700.1 528 DAAVNVTSDAINKIERFLIVPKIETTVLGRLHS----LEKMPPWKTLFASAGFTPLTFSNFTETQAECVVKRAQVQGFHIEKCHASLVLCW 614
                         ***************************998887....9***************************************************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++++L+s+SaWr
  Gorai.003G170700.1 615 QQKELISASAWR 626
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.79239606IPR005202Transcription factor GRAS
PfamPF035145.7E-95266626IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MHFQFQPKVG VELAGFASIY QDKWAKQQED NSFNDQEPTS VLHMRSQSPP TSASTLSSSF  60
NGGSGGGGSG GNFTTTTIVP PESTQLEFQP IQSELDLVTT GPVGVQRCNN LGIEDWEAML  120
FESTVSPSQD QNSLLRWIAG DVDDHGLKQL LQTGPDFIPG FDPMDPGNLG YFPQNPIFTS  180
PPESIGLYQQ LENQEMKPQI LNPQNPNFFL PFPQEQQPLP KRLNHGQIPK LPFSDHELFI  240
KKQQLVGFQE QKPLMVSQQQ QAATLLDQLC KVAEMVETGN FSHAQGILAR LNHLSPVGKT  300
FQRIGFYFKE ALQLLLLMYN NTPVSKNPTP FDVIFKMGAY KVFSEVSPFV QFVNFTSNQA  360
FLEALENSDR IHIVDFDIGF GAQWASFMQE LPMRSKGVVP SLRITAFVSL STYHPIELGL  420
IRENLEQFAN GIGVNFELEV LNFDCLDQNP YSLPMFRMNE NEALAVNFPV WSASYRPSIL  480
PNLLRIVKQL RPKIVVSLDR GCDRNDLSFP QHIINAFYSY ISLLESLDAA VNVTSDAINK  540
IERFLIVPKI ETTVLGRLHS LEKMPPWKTL FASAGFTPLT FSNFTETQAE CVVKRAQVQG  600
FHIEKCHASL VLCWQQKELI SASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3529762636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.11610.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6228214e-78JX622821.1 Gossypium hirsutum clone NBRI_GE69712 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472000.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A0D2P2W50.0A0A0D2P2W5_GOSRA; Uncharacterized protein
STRINGGorai.003G170700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2493934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-110GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]