PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G162600.1
Common NameB456_003G162600, LOC105789909
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 177aa    MW: 18787 Da    PI: 4.7951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G162600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-161259355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ t+e+Aa+a++ a+++l+g
  Gorai.003G162600.1 12 YRGIR-CR-SGKWVSEIREPR----KaTRIWLGTYPTPEMAAAAYDVAALALKG 59
                        9***9.55.6*********94....36************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.0731167IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-181169IPR016177DNA-binding domain
SMARTSM003805.0E-281173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-271169IPR001471AP2/ERF domain
PRINTSPR003677.9E-71223IPR001471AP2/ERF domain
PfamPF008471.5E-91259IPR001471AP2/ERF domain
CDDcd000189.98E-181269No hitNo description
PRINTSPR003677.9E-74969IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASSSSGKHP MYRGIRCRSG KWVSEIREPR KATRIWLGTY PTPEMAAAAY DVAALALKGS  60
EAVVNFPDSV GSYPIPGSTS SADIRKAAAA AAAMKRGENK SSESSNLVAT VQNHVVKDEG  120
FTTGEYVDED VFLNMPNLLV DMANGLLVSP PRISLIPSDD DDDSPDNCNG GSLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-14572168ATERF1
3gcc_A1e-14572168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2598100.0KP259810.1 Gossypium barbadense APETALA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472669.11e-127PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0D2RNQ41e-126A0A0D2RNQ4_GOSRA; Uncharacterized protein
STRINGGorai.003G162600.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-38ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]