PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G162400.1
Common NameB456_003G162400, LOC105789154
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 643aa    MW: 71269.2 Da    PI: 6.1265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G162400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.11e-1252586271374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL +c+ea+ s++ +++++++++l elasp+g+ + Rl+ay+teALa r++r +++++++ +p+e + +  +++ +al+l+++v+Pil
  Gorai.003G162400.1 258 LIRLLAACVEAIGSKNIAAINHFISKLGELASPKGTVISRLTAYYTEALALRVTRVWPHIFHITTPRELD-RLDDDNGTALRLLNQVTPIL 347
                         5789**************************************************************9998.568888999*********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf h+t N+ +l+a+eg++rvHi+Dfdi+qGlQWp+L+q+LasR+++p ++R+Tg+g+    sk+el+etg+rLa fAe+l++pfef++ v
  Gorai.003G162400.1 348 KFVHFTSNEILLRAFEGKDRVHIVDFDIKQGLQWPSLFQSLASRTNPPSHVRVTGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-V 433
                         **********************************************************....***************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++rled++l++L+ k++E++aVn+v+qlh++l +        +++L l++s++P  v+++eqe++ n  ++ +r++++l+yysa+fds+++
  Gorai.003G162400.1 434 VDRLEDVRLWMLHAKENESIAVNCVFQLHKTLYDGNGGV--LRDFLGLIRSINPIAVIIAEQETENNILNLEARVANSLRYYSAIFDSIDS 522
                         *******************************96655444..489*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslv 359
                         +lp es  rik+E++ ++rei+n++aceg++r+erh+++ekWr+ +e+ GFk + +++++  q ++ll+++ s+ y+v+++     +g+l+
  Gorai.003G162400.1 523 TLPLESPVRIKIEEM-FAREIRNLIACEGSDRFERHTSFEKWRKLMEQGGFKCMGITDRELVQSQMLLKMYTSENYSVKKQgpdgdDGALT 612
                         ***************.********************************************************999****77777779**** PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l W d+pL++vSaW+
  Gorai.003G162400.1 613 LSWLDEPLYTVSAWT 627
                         **************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.426232602IPR005202Transcription factor GRAS
PfamPF035143.5E-123258627IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE TSAVQFQACH FQTSMSTQRL DLPCNFSRKE TSKSQTIRPA  60
VESKAKTSSC SIKQNIRLPP LTTTSAQNPF EGRIEIKGKS LKRFAEQGLV DDETVINRAK  120
RKKGSSDDEK PGDDHGGLSL GQLGAGNFWF QPSLSGDEER GTPPLPLSNN PWIDSVITEL  180
TGVGEKDVET IHRPGKEASG SGSTSTSEES HSLGPPLNVQ AQEHERGNGS GNPYPHEGAR  240
LGANEEEINH REHEGFELIR LLAACVEAIG SKNIAAINHF ISKLGELASP KGTVISRLTA  300
YYTEALALRV TRVWPHIFHI TTPRELDRLD DDNGTALRLL NQVTPILKFV HFTSNEILLR  360
AFEGKDRVHI VDFDIKQGLQ WPSLFQSLAS RTNPPSHVRV TGIGESKQEL NETGDRLAGF  420
AEALNLPFEF HPVVDRLEDV RLWMLHAKEN ESIAVNCVFQ LHKTLYDGNG GVLRDFLGLI  480
RSINPIAVII AEQETENNIL NLEARVANSL RYYSAIFDSI DSTLPLESPV RIKIEEMFAR  540
EIRNLIACEG SDRFERHTSF EKWRKLMEQG GFKCMGITDR ELVQSQMLLK MYTSENYSVK  600
KQGPDGDDGA LTLSWLDEPL YTVSAWTPID VAGSSSSFSQ PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-732426281380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471866.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0D2P2G60.0A0A0D2P2G6_GOSRA; Uncharacterized protein
STRINGGorai.003G162400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]