PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G160600.2
Common NameB456_003G160600, LOC105789139
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 311aa    MW: 34610.6 Da    PI: 4.9415
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G160600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36291202102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++++++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k 
  Gorai.003G160600.2  29 FLSKTYQLVDNPSVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRGEKG 110
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Gorai.003G160600.2 111 LLRDIQRRKI 120
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.4E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.7E-3826118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.6E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAPLPADQPC ESHASGAVAD SQRSLPTPFL SKTYQLVDNP SVDDLISWND DGSTFIVWRP  60
AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFA NDCFKRGEKG LLRDIQRRKI  120
THNASGMTIA AVACKPSPSN SSDEQVISSN SPPVATVLNR TTSCTTTAEL LEENERLRKE  180
NMQLNHELTQ LKRLYNNIVI LMTNYASGQV ENRSNLAEGK ALDLLPARTR DGGGSKPVPA  240
ETEEEAAEDL RPKLFGVSIG MKRVRREGEE EEGVMDEEQQ QEIKPGSDIK SEPLDGNNDN  300
QDSTWLGLGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-252911829129Heat shock factor protein 1
5d5v_B1e-252911829129Heat shock factor protein 1
5d5v_D1e-252911829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024480.0KJ702448.1 Gossypium hirsutum heat shock transcription factor (HSF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471839.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-103HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0D2MPN50.0A0A0D2MPN5_GOSRA; Uncharacterized protein
STRINGGorai.003G160600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-87HSF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]