PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G140100.1 | ||||||||
Common Name | B456_003G140100, LOC105788925 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 881aa MW: 99246.9 Da PI: 6.5801 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45 | 3.5e-14 | 62 | 135 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eY +++GF+ ++ + ++sk++g+++ r+fvC k g ++++ ++ C+a+l+++++ +kw+vtk+++eH H+++ Gorai.003G140100.1 62 YYDEYCRHMGFNSKVGQLSRSKTDGTVVAREFVCGKDGLKRRSADS--------------CDAMLRIELK-GDKWVVTKFVKEHRHSVT 135 8**************************************9998877..............**********.9**************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-10 | 62 | 135 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-25 | 274 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.165 | 552 | 588 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.8E-10 | 560 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.8E-8 | 563 | 590 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 881 aa Download sequence Send to blast |
MDVHVIGPEE GMSHRGISDD GDAEPSEGEL NHLNNSLAHD EDEISEPYLG MEFDSEGAAK 60 TYYDEYCRHM GFNSKVGQLS RSKTDGTVVA REFVCGKDGL KRRSADSCDA MLRIELKGDK 120 WVVTKFVKEH RHSVTSPSKV HYLRPRRHFA GAAKTMVDTC QGVGIVPSGV MYVSMDGNRA 180 SMNANTRGVR NTPLAEANRS AKNFGTLSYA VRPVTRKRTL GRDAQNLLDY FKKMQAENPG 240 FFYAIQLDDD NQMANAFWAD ARSRTAYAHF GDAVKLDTSY RVNQYRVPFA PFSGMNHHGQ 300 TILFGCALLL DDSDASFVWL FKTFLTAMND RQPVSLITNQ DRAIQTAVSQ VFPGVRHCIN 360 KWHILREGPE KLAHVCQVHP NFQVELYNCI NLTETIEEFE LSWSSLIEKY NLSAHDWLQS 420 LYSARAQWVP VYFRDSFFAA ISLNQGFDGS FFYGYVNQQT TIPMFFRQYE RAMENWFERE 480 IEADFDTICT TPVLRTPSPM EKQAADLYTR KIFTKFQEEL VETFVYTANR IDGDETISTF 540 RVAKFEDVNK AYMVTLNYPE MRANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKSGVG TDERGGELHG QVSLTARYNS LCREAIKYAE DGAIATETYN SAMGALKEGG 660 KKVSVVKKNV AKFAPPGSQA STAAYDDNSS STLGPDTAPL LWPQQDEITW RFNLNDTGAP 720 TQSVSDLNLP HMAPVSLHRD DGHPDNMPVL PCLKSMTWEM ENKNSMPGNR VAVINLKLQD 780 FGKNPSAEME VKFQLSRVTL EPMLRSMAYI SEQLSTPANR VAVINLKLQD SETTTGESEV 840 KFQVSRDTLG AMLRSMAYIQ EQLSNGNEAQ AEPLPKKHRR * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471467.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X2 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A0D2QKG1 | 0.0 | A0A0D2QKG1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G140100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G140100.1 |
Entrez Gene | 105788925 |
Publications ? help Back to Top | |||
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