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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.003G139800.1 |
Common Name | B456_003G139800, LOC105788922 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
AP2 |
Protein Properties |
Length: 476aa MW: 52472.3 Da PI: 8.3184 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.003G139800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 153 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Gorai.003G139800.1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202
78*******************......55************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 476 aa
Download sequence Send
to blast |
MLDLNLNVAS PESTQGLDSV APFTDELINE GSRNQMDESG TSNSSIVNED GESCSTRASG 60 EAFTLSFDIL KVGRESRNHE AALVVTRELF PVKGIGADFG SSEGQSSGNS SNKSKWIDLS 120 FERKEAAAEP RVMQQQPLQT VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTAHAAA RAYDRAAIKF RGVDADINFS LCDYEDDMKQ TKDLSKEEFV HVLRRQSAGF 240 RGKLEISRSN VAQMRQVGST DGAVPRQKVR YLFLGKRAYD RAAIKSNGRE AVTNFELSTY 300 EGEMVFDTRN KGNSHNLDLN LGISPPVSDG PKEKENAGHL QMNNGKSLRA ENPAAATFSV 360 PSFQGLAGTS DQPIFWNSAY PRFFPSEERT MVKPVEFDPP QRVPDWPWQM HGQVSTTLMP 420 LFSHAASSRF SFSATPPSTA TAILPSKPQN TTAVHSLCFA ASISDTINTP QHSRS*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |