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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.003G103000.1 |
| Common Name | B456_003G103000, LOC105788478 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 230aa MW: 26925.7 Da PI: 9.6417 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.003G103000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 95.1 | 3.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g++KKA+E+SvLCda+va+++fss+gkl+ey++
Gorai.003G103000.1 9 KRIENKINRQVTFSKRRSGLMKKAHEISVLCDAQVALMVFSSKGKLFEYAT 59
79***********************************************86 PP
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| 2 | K-box | 99 | 6.7e-33 | 81 | 174 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
e +++ +++ e+akLk+++e+Lqr++Rh+ Ged+++Lsl+eLq+LeqqL+++lk+iRs+Kn+l+le+i+elqkk k+lqe+n+ L kk
Gorai.003G103000.1 81 ATDEIQQNGNWTWEHAKLKARMETLQRNLRHYEGEDIQNLSLRELQNLEQQLDSALKRIRSRKNQLMLESISELQKKDKALQEQNNILAKK 171
556678899********************************************************************************** PP
K-box 98 lee 100
l+e
Gorai.003G103000.1 172 LKE 174
986 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 2.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.54E-40 | 2 | 75 | No hit | No description |
| SuperFamily | SSF55455 | 2.75E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 8.6E-27 | 83 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 16.711 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLMK KAHEISVLCD AQVALMVFSS KGKLFEYATE 60
SCMERILERY ERNSYTEIQC ATDEIQQNGN WTWEHAKLKA RMETLQRNLR HYEGEDIQNL 120
SLRELQNLEQ QLDSALKRIR SRKNQLMLES ISELQKKDKA LQEQNNILAK KLKEKEKTNV 180
EQAHWQLNNN CQDSSSMLLP LNISSNGREK EETTNSGVLL PWMIRHHLE*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 2e-21 | 1 | 70 | 1 | 69 | MEF2C |
| 5f28_B | 2e-21 | 1 | 70 | 1 | 69 | MEF2C |
| 5f28_C | 2e-21 | 1 | 70 | 1 | 69 | MEF2C |
| 5f28_D | 2e-21 | 1 | 70 | 1 | 69 | MEF2C |
| 6c9l_A | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-21 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC155638 | 0.0 | KC155638.1 Gossypium hirsutum MADS box protein MADS43 mRNA, complete cds. |
| Publications
? help Back to Top |
- Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751]
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