PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G100400.1
Common NameB456_003G100400, LOC105788449
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 427aa    MW: 47885.6 Da    PI: 7.1398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G100400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054100119221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ Cgk F ++  L  H++
  Gorai.003G100400.1 100 VCKECGKGFQSWKALFGHMK 119
                         6******************7 PP
2zf-C2H2120.00062339361123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C k+F++   L  H r+H
  Gorai.003G100400.1 339 HECPICLKVFPSGQALGGHKRSH 361
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-7931No hitNo description
SMARTSM003550.15931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307931IPR007087Zinc finger, C2H2
PfamPF139123.7E-6932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-794121No hitNo description
SMARTSM003550.01799121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.80399126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PfamPF139121.1E-7101123IPR007087Zinc finger, C2H2
SMARTSM003550.36268290IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.51E-7268290No hitNo description
PfamPF139123.2E-10268292IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889268295IPR007087Zinc finger, C2H2
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
SuperFamilySSF576676.51E-7334361No hitNo description
SMARTSM003550.071339361IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058339366IPR007087Zinc finger, C2H2
PfamPF139125.9E-13339361IPR007087Zinc finger, C2H2
PROSITE patternPS000280341361IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEEEQEFKHV CKFCSKSFPC GRSLGGHMRS HMNNIIINNN NSIETDEKLC KKKLVTLNNV  60
GHDSNTDETG VDGGYILREN PKKTWRLTDL SEDSSVHDKV CKECGKGFQS WKALFGHMKC  120
HSDKEKSPVN SLEEQDSWSH GEQKPVVDSQ SDNETGVPSK KRRSKRRTRY IGTPNSVMSE  180
IEQEQQEEVA LSLMMLSRDV RHWVGLNSDN SMFSEAKIQI KNPKLKNLES AVMESERKNK  240
NLVIQTYDQA SDVVESEFCK DPHKRSKFEC TTCKKIFHSY QALGGHRASH KRTKGCSASD  300
NSETSTETET SPEPNPTSAT DTANLVSDSY GVVKKNKGHE CPICLKVFPS GQALGGHKRS  360
HLVAEAKENR SQTIETQNPI PEIRDFLDLN LPAPVEEGTS SVHMGFEPWW VGTTHKHEPL  420
LGLISN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164KKRRSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470813.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A0D2MLV50.0A0A0D2MLV5_GOSRA; Uncharacterized protein
STRINGGorai.003G100400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16472912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-31C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]