PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G099900.1

Common Name

B456_003G099900, B456_010G022000, LOC105773812, LOC105788444

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 407aa MW: 46548.1 Da PI: 7.5633

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G099900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	153	176	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H Gorai.003G099900.1 153 YICGVCGRKCKTNLDLKKHFKQlH 176 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	5.3E-6	73	143	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.575	153	181	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	155	176	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.01E-12	182	307	No hit	No description
Gene3D	G3DSA:3.40.50.1010	5.3E-6	238	294	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MSSLCNSLKS LHVNPTFFPT KPELPFSFSL SPISAPPFKS KSSPTRCRLT VKAEANAVEI 60 DMVRNKQGVY APKQKKVVVL WDLDNKPPRG PPYEAALALK RVAEKFGEVV DMSAYANRHA 120 FVHLPQWVLQ ERRERRSLDI LERKGIVKPD EPYICGVCGR KCKTNLDLKK HFKQLHERER 180 QKKLNRMKSL KGKKRQRFKE RFISGNHKYN EAARSIIKPK IGYGLASELR RAGVYVKTVE 240 DKPQAADWAL KRQMQHSMSR GIDWLFLVSD DKDFVEMLRR AREADLGTVV VGDWDRGLGR 300 HADLWVSWVE VENGEVSEKD LVPKRKRMSS DDGLFSVSEF DGENISIGEL DGVANELLVG 360 RNEYGGMMIS VFSEDEDEWD IEEVGDEDYL LDGSEDEMIF EEDGYY*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MSSLCNSLKS LHVNPTFFPT KPELPFSFSL SPISAPPFKS KSSPTRCRLT VKAEANAVEI  60
DMVRNKQGVY APKQKKVVVL WDLDNKPPRG PPYEAALALK RVAEKFGEVV DMSAYANRHA  120
FVHLPQWVLQ ERRERRSLDI LERKGIVKPD EPYICGVCGR KCKTNLDLKK HFKQLHERER  180
QKKLNRMKSL KGKKRQRFKE RFISGNHKYN EAARSIIKPK IGYGLASELR RAGVYVKTVE  240
DKPQAADWAL KRQMQHSMSR GIDWLFLVSD DKDFVEMLRR AREADLGTVV VGDWDRGLGR  300
HADLWVSWVE VENGEVSEKD LVPKRKRMSS DDGLFSVSEF DGENISIGEL DGVANELLVG  360
RNEYGGMMIS VFSEDEDEWD IEEVGDEDYL LDGSEDEMIF EEDGYY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451405.1	0.0	PREDICTED: uncharacterized protein LOC105773812
Refseq	XP_012470807.1	0.0	PREDICTED: uncharacterized protein LOC105788444
TrEMBL	A0A0D2RJU7	0.0	A0A0D2RJU7_GOSRA; Uncharacterized protein
STRING	Gorai.003G099900.1	0.0	(Gossypium raimondii)
STRING	Gorai.010G022000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12584	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-177	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.003G099900.1
Entrez Gene	105773812 \| 105788444

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]