PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 33754.6 Da PI: 4.619

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G094500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	4.9e-20	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Gorai.003G094500.1 89 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 142 55689************************************************9 PP
2	HD-ZIP_I/II	126.8	9.6e-41	89	179	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl+ +q+++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L + y++lk++ + L ke+++L+ee+ Gorai.003G094500.1 89 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLLAMYNSLKADYDDLLKEKDKLKEEVL 179 9**************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.0E-20	87	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-19	88	152	IPR009057	Homeodomain-like
CDD	cd00086	7.18E-18	89	145	No hit	No description
Pfam	PF00046	2.3E-17	89	142	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.989	89	144	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-20	91	151	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	115	124	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	124	140	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.1E-13	144	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MAGGRVYPSN NDTTDGVPNN LSVLLQNQRL HPLFIPGSSP SPSFLGTRSM VSFEDSLKTN 60 RPKRSIFKMF DEQENGYDEY LEECFHQPKK RRLTVDQIQF LEKSFEVDNK LEPERKIQLA 120 KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY DTLLAMYNSL KADYDDLLKE KDKLKEEVLQ 180 LTDKLQTKEN ERRNSEFSDV KPLLLQEPSQ KPIVVSMAAC KQEDIDSDNI PQYYSDEFHS 240 SLLEAADSSY PFEPDQSDLS QDEEDSLHPP ASLSNFGFPV EDHPFWSWTY *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470727.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A0D2QI00	0.0	A0A0D2QI00_GOSRA; Uncharacterized protein
STRING	Gorai.003G094500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28371	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-43	homeobox 1

Link Out ? help Back to Top
Phytozome	Gorai.003G094500.1
Entrez Gene	105788391

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]