PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 363aa MW: 40702.4 Da PI: 7.4829

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G089200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	285	307	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Gorai.003G089200.1 285 FMCRKCGKAFAVRGDWRTHEKNC 307 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.58	201	223	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.4E-6	201	220	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	201	228	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	203	223	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.7E-6	267	305	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-5	281	305	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	285	305	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	285	305	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MADYPYTNFF SGWFKFNPVQ HYPSPNPPPP PPPHPLQQPN SFTHDFYSNS RNDRSSHINP 60 FFHYQTSCSS SSPPSPPVRE ALPLLSLSPT RQNNEDQDQD QCSWTTAMNV DSTKGKEEGR 120 RLLFTNTTAA EAEDETVTVA LHIGLPSPSA SELASFLSSS SEITDKDGDG DDSSGCAVNR 180 LNKGQYWIPT PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT 240 GMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW 300 RTHEKNCGKL WYCICGSDFK HKRSLKDHIK AFGNGHAAYG IDGLEEDDEP ASEVEQDNDS 360 MQ*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MADYPYTNFF SGWFKFNPVQ HYPSPNPPPP PPPHPLQQPN SFTHDFYSNS RNDRSSHINP  60
FFHYQTSCSS SSPPSPPVRE ALPLLSLSPT RQNNEDQDQD QCSWTTAMNV DSTKGKEEGR  120
RLLFTNTTAA EAEDETVTVA LHIGLPSPSA SELASFLSSS SEITDKDGDG DDSSGCAVNR  180
LNKGQYWIPT PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT  240
GMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW  300
RTHEKNCGKL WYCICGSDFK HKRSLKDHIK AFGNGHAAYG IDGLEEDDEP ASEVEQDNDS  360
MQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470631.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-148	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D2QHR4	0.0	A0A0D2QHR4_GOSRA; Uncharacterized protein
STRING	Gorai.003G089200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-133	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G089200.1
Entrez Gene	105788330

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]