PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 377aa MW: 40871 Da PI: 6.4227

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G048800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66.7	4.4e-21	157	206	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae+Aa+a+++a+++++g Gorai.003G048800.1 157 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 206 7******.******66.....56***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.7E-33	157	215	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-37	157	220	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-14	157	206	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.515	157	214	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.9E-23	157	215	IPR016177	DNA-binding domain
PRINTS	PR00367	5.6E-12	158	169	IPR001471	AP2/ERF domain
CDD	cd00018	5.15E-29	165	216	No hit	No description
PRINTS	PR00367	5.6E-12	180	196	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006970	Biological Process	response to osmotic stress
GO:0009749	Biological Process	response to glucose
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MYQLMMTRED GSSSAAVAEA VPSSSLMLSD VCRDREMSVM VSALTHVVAG DVPADDEELS 60 GNEYLDWRSN NINPSLGFCG IKRGREEVNG CATGGGGVGR MAVESVANLC SQFVHLPHGG 120 SSSAVAGVTE ANTPAQLVPT YEYNSNENNN REEPRRRYRG VRQRPWGKWA AEIRDPFKAA 180 RVWLGTFDTA EDAARAYDEA ALRFRGNKAK LNFPENVKLR SVPPNQTATH FPISDSPNTH 240 FSIPTSTEPI VHHSQSHYSV PNPQVAGGYL DYSQLFLGSS TSSFPREQQL QQLRQNQPIY 300 PYDRTVLSSS VSSRAQSSSL SSSSPASPPT SYPIVFPLQA SGYQFNLGNS SQGGGIGDFS 360 VHSWSSDSSQ YPSTTK*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MYQLMMTRED GSSSAAVAEA VPSSSLMLSD VCRDREMSVM VSALTHVVAG DVPADDEELS  60
GNEYLDWRSN NINPSLGFCG IKRGREEVNG CATGGGGVGR MAVESVANLC SQFVHLPHGG  120
SSSAVAGVTE ANTPAQLVPT YEYNSNENNN REEPRRRYRG VRQRPWGKWA AEIRDPFKAA  180
RVWLGTFDTA EDAARAYDEA ALRFRGNKAK LNFPENVKLR SVPPNQTATH FPISDSPNTH  240
FSIPTSTEPI VHHSQSHYSV PNPQVAGGYL DYSQLFLGSS TSSFPREQQL QQLRQNQPIY  300
PYDRTVLSSS VSSRAQSSSL SSSSPASPPT SYPIVFPLQA SGYQFNLGNS SQGGGIGDFS  360
VHSWSSDSSQ YPSTTK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-24	156	217	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00584	DAP	Transfer from AT5G64750	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP259809	0.0	KP259809.1 Gossypium barbadense ethylene-responsive element binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469936.1	0.0	PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBL	A0A0D2NWF3	0.0	A0A0D2NWF3_GOSRA; Uncharacterized protein
STRING	Gorai.003G048800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	2e-24	ethylene response factor 110

Link Out ? help Back to Top
Phytozome	Gorai.003G048800.1
Entrez Gene	105787886

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]