PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G042700.1

Common Name

B456_003G042700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 271aa MW: 30084.6 Da PI: 7.7123

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G042700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.1	8.8e-33	82	136	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Gorai.003G042700.1 82 KPRYRECLKNHAVGIGGHALDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKESE 136 779***********************9.999******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-23	84	136	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	9.4E-30	84	135	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.8E-30	84	134	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.576	85	134	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	5.1E-32	194	269	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-19	195	268	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.6E-26	207	263	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MSSMQTVANN GQTPNPIPAI ITVATPLFAP TGGEMEFEDQ EEQEEEMGLT PSYDSLGNSS 60 RLKMSGVEPG SVTPTGQQQQ RKPRYRECLK NHAVGIGGHA LDGCGEFMPA GTEGTLDALK 120 CAACNCHRNF HRKESELGSP NSIHTTDLYF HHHHHHQPPQ FAPYFRAPTG YLHVAGQQRP 180 LALPSTSGGG GHSREDQEDA SNQGSSRKRF RTKFTQEQKE KMLSLAERLG WRIQKHDEEI 240 VQQFCNETGV KRHVLKVWMH NNKHTLGKKP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-27	208	265	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016740746.1	1e-178	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Swissprot	Q6YXH5	7e-80	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0D2MJ39	0.0	A0A0D2MJ39_GOSRA; Uncharacterized protein
STRING	Gorai.003G042700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-73	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Gorai.003G042700.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]