PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G041800.1

Common Name

B456_003G041800, LOC105787816

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 324aa MW: 36010.4 Da PI: 7.8977

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G041800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	122	172	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ h ++Er+RR+++N+ ++ Lr+++P++ + ++ + a+i A++++k L Gorai.003G041800.1 122 QRMIHIAVERNRRRQMNDYLAVLRTMMPNS---YVQRGDQASIIGGAINFVKVL 172 6999************************...9*************99977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.04E-12	120	177	No hit	No description
PROSITE profile	PS50888	14.437	121	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-16	121	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	122	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-12	123	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-9	127	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MALEAVVFQR DPFCYGGSGP CNTYGVGFQQ QEEKANYSNN GEMVSKSGGG GTRGSSSSSF 60 MVHQTLKEWP WDFNSSSSPD IGFSTGGPIF SPTEAPAIDT RSCRRRRRRP KSVKNKEEIE 120 NQRMIHIAVE RNRRRQMNDY LAVLRTMMPN SYVQRGDQAS IIGGAINFVK VLEQILQSLE 180 ARKRMEKRSD STTFSSLFSD FFSFPQYSTS IQTETPGEST AEKWSFPSCS SSSSVADVEV 240 TMVDSHANVK ILSKKHPKQL FNMVSGLHSL GLFVLHLNVT SVENRVLYSL SVKVEENCQL 300 NTVNEIAAAV YEMVDKFQEE AAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	108	RSCRRRRRR
2	122	133	RMIHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469829.1	0.0	PREDICTED: transcription factor bHLH94-like
Refseq	XP_012469830.1	0.0	PREDICTED: transcription factor bHLH94-like
Refseq	XP_012469831.1	0.0	PREDICTED: transcription factor bHLH94-like
TrEMBL	A0A0D2QN33	0.0	A0A0D2QN33_GOSRA; Uncharacterized protein
STRING	Gorai.003G041800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22170	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G041800.1
Entrez Gene	105787816

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]