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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.003G041500.3 |
Common Name | B456_003G041500 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HD-ZIP |
Protein Properties |
Length: 301aa MW: 34094.4 Da PI: 4.5549 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.003G041500.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.6 | 5.1e-19 | 45 | 98 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k
Gorai.003G041500.3 45 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 98
566899***********************************************9 PP
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2 | HD-ZIP_I/II | 129.3 | 1.5e-41 | 44 | 136 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++y++lk++ e+L++++e+L +e+
Gorai.003G041500.3 44 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKANYEALQHDNEALLKEI 134
69*************************************************************************************9999 PP
HD-ZIP_I/II 92 ke 93
+e
Gorai.003G041500.3 135 RE 136
86 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MNDLCFGADE HSPRNNHVYS REFQSMLDGL DEEGCLEESG HVAEKKRRLS VDQVKALEKN 60 FEVENKLEPE RKVKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYGLLK TSYETLKANY 120 EALQHDNEAL LKEIRELQAK HSGESTETES NVSVKEEVIV SENTDNKTLE QSEPAADLNY 180 GSVVLGATLF PDMKDGSSDS DSSAILNEDI ILNTNTNKDN SPNNAAFSSS GVLELDSQHH 240 LLISSSSSPT SSMDCFNFTK TSYQPHQYVK MEEHNFFTAD EACNFFSDPS LHWYSPEQWN 300 *
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 92 | 100 | RRARWKTKQ |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ527086 | 0.0 | HQ527086.1 Gossypium herbaceum clone NBRI_D2_391 simple sequence repeat marker, mRNA sequence. |