PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G034700.1
Common NameB456_003G034700, LOC105789779
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 360aa    MW: 39992.2 Da    PI: 7.9166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G034700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14181227455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++N++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Gorai.003G034700.1 181 DHIMAERKRREKLNQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 227
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.923177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-18181239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18181241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-13182231No hitNo description
SMARTSM003531.6E-15183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDSSSAKWLS ELGMDEYDII HQCHMNSLAE LTAGEDITAT AFTRGNFKQS SFSSESYSSY  60
PNFTTKNNSV SSINEASDRP IKQLKTGTSW NSSTITNINH VPVPKKPSSP TSHILSFEKP  120
AASLPANSKQ LYGIDNIVKP KDETVCSGNN MNYFGQFQST NYTAKNSRSY SMTRSPSHAQ  180
DHIMAERKRR EKLNQRFIAL SAIVPGLKKM DKASVLGDAI KYVKQLQERL KVLEEQTKKR  240
TVESVVFVKK CQLLSADDES SSCEENSDGQ SSDAALPEIE AKVSDNDVLI RIHCEKHKGF  300
IAKILSEIEN LRLSIVNTNA LPFGNSTLDI TIIAEKDAEF NMTVKDLVKD LRMALLKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13181244869Transcription factor MYC2
5gnj_B1e-13181244869Transcription factor MYC2
5gnj_E1e-13181244869Transcription factor MYC2
5gnj_F1e-13181244869Transcription factor MYC2
5gnj_G1e-13181244869Transcription factor MYC2
5gnj_I1e-13181244869Transcription factor MYC2
5gnj_M1e-13181244869Transcription factor MYC2
5gnj_N1e-13181244869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERKRRE
2186191RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472591.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0D2MIV40.0A0A0D2MIV4_GOSRA; Uncharacterized protein
STRINGGorai.003G034700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-72bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]