PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 364aa MW: 41435.8 Da PI: 7.7647

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G021300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1.1e-32	238	293	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFvea+++LGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gorai.003G021300.1 238 KQRRCWSPELHKRFVEALQKLGGSKVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 293 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.212	235	295	IPR017930	Myb domain
SuperFamily	SSF46689	1.4E-18	236	296	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	237	296	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-27	238	293	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-9	240	291	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MFEKKREREK KRIMELNMDV DLVYVPETVS EFLKQASKIK NGFQRLCKIS DYVRRLEDEM 60 KKIDAFKREL PICMLLLKDV IKRLKEEEMM CKELGDGSVT IDEGNGKVNK ENDGGAGNKR 120 NWLSTVQLWN SDSEKVDQNK KPNKVPGLKL GSEEEEEEEQ DMFEDPIEFF NNRRFKGQMD 180 KENLELSLMT PSFDLGSSSP SHNPILKIND NCKTGFGSDQ NQTKFQTKHQ QDMQNCKKQR 240 RCWSPELHKR FVEALQKLGG SKVATPKQIR ELMQVDGLTN DEVKSHLQKY RLHFRKVASD 300 SSAQNQCNEK MKANISESDS PQGPLRAGGW AKGLSSGGSV VEGEDDEKSD GRSWRSGGTK 360 TGD*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MFEKKREREK KRIMELNMDV DLVYVPETVS EFLKQASKIK NGFQRLCKIS DYVRRLEDEM  60
KKIDAFKREL PICMLLLKDV IKRLKEEEMM CKELGDGSVT IDEGNGKVNK ENDGGAGNKR  120
NWLSTVQLWN SDSEKVDQNK KPNKVPGLKL GSEEEEEEEQ DMFEDPIEFF NNRRFKGQMD  180
KENLELSLMT PSFDLGSSSP SHNPILKIND NCKTGFGSDQ NQTKFQTKHQ QDMQNCKKQR  240
RCWSPELHKR FVEALQKLGG SKVATPKQIR ELMQVDGLTN DEVKSHLQKY RLHFRKVASD  300
SSAQNQCNEK MKANISESDS PQGPLRAGGW AKGLSSGGSV VEGEDDEKSD GRSWRSGGTK  360
TGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ837700	0.0	JQ837700.1 Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469518.1	0.0	PREDICTED: probable transcription factor KAN3
TrEMBL	A0A0D2RFB9	0.0	A0A0D2RFB9_GOSRA; Uncharacterized protein
STRING	Gorai.003G021300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	5e-55	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G021300.1
Entrez Gene	105787594

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]