PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 24947.3 Da PI: 5.9488

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G016600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	58	112	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Gorai.003G016600.1 58 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 112 45699************************************************95 PP
2	HD-ZIP_I/II	118	5.1e-38	58	149	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ ++ ++ e++rLe+ev +L+++l+ Gorai.003G016600.1 58 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTIHEGVVVEKCRLESEVLKLKDQLR 148 9****************************************************************************************98 PP HD-ZIP_I/II 93 e 93 e Gorai.003G016600.1 149 E 149 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.827	53	113	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	56	117	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-17	58	120	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-16	58	112	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-20	60	120	IPR009057	Homeodomain-like
CDD	cd00086	3.74E-15	60	114	No hit	No description
PRINTS	PR00031	1.4E-5	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	93	109	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MTTQMKELED PMALITQMYP CIYTQVAPQQ GEISKPRRRR KKNKGGESGA ATAAETAKKR 60 KLSQEQVDLL ELNFGNEHKL ESERKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS 120 KLKTIHEGVV VEKCRLESEV LKLKDQLREA EKEIQGLTER VDGVSSNSPS SSSVLSMEAV 180 DPPPFLGEFG AQGFEDQDVF YIGQNSYING MEWMNLYM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	60	RKKNKGGESGAATAAETAKKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469456.1	1e-162	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	3e-77	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0D2QEE4	1e-161	A0A0D2QEE4_GOSRA; Uncharacterized protein
STRING	Gorai.003G016600.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2208	26	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-67	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Gorai.003G016600.1
Entrez Gene	105787556

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]