PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G014100.1

Common Name

B456_003G014100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 292aa MW: 32900.9 Da PI: 9.2918

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G014100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.8	5.2e-33	57	112	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAa++Ggh+vDGCgEfmps geegt+aa+kCaAC+CHRnFHR+e + Gorai.003G014100.1 57 VVRYRECLKNHAATMGGHVVDGCGEFMPS-GEEGTMAAMKCAACECHRNFHRKEING 112 589***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-21	58	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.6E-30	58	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.3E-30	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.453	60	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.55E-19	167	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-29	169	235	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.5E-27	173	230	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MELRDQDKEM GLPLPLSSSQ TPNPRPPQTL NHYPNIDPLP PGSVAGAEPE PVGSSLVVRY 60 RECLKNHAAT MGGHVVDGCG EFMPSGEEGT MAAMKCAACE CHRNFHRKEI NGESQYLPPL 120 PRRNGVVHLQ QQPVRFPAPV MMSFGGGGGG TAEESSSEDL RHDELINVPQ SSKKRFRTKF 180 SQDQKEKMME FAETLGWRIQ KQDEHELQMF CSQVGVKRQV FKVWMHNNKQ AMKKKQMKKK 240 ESSAVTKTKN KSQIYLKMLC CFCWLFTYFP QNSLVLKRGI AMGNVWLSKE V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-22	172	231	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469414.1	1e-178	PREDICTED: zinc-finger homeodomain protein 6-like
Swissprot	Q9ZPW7	2e-65	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A0D2MHX9	0.0	A0A0D2MHX9_GOSRA; Uncharacterized protein
STRING	Gorai.003G014100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6515	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	2e-58	homeobox protein 33

Link Out ? help Back to Top
Phytozome	Gorai.003G014100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]