PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 260aa MW: 31417.6 Da PI: 8.4689

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G262900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.5	2.1e-24	35	118	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e++ ++ ++k++k+lWe +s ++e+g++rs++qCk+kw+nl +ryk ++ e++ ++++++p++++l+ Gorai.002G262900.1 35 QWSIQETKEFLMIRAELDPSFMETKRNKQLWEFISTTLKEKGYNRSAEQCKCKWKNLVTRYKGCEMVEEEA--KRQQQFPFYNDLQ 118 7******************************************************************95..66678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	6.59E-21	34	99	No hit	No description
Pfam	PF13837	1.4E-19	35	120	No hit	No description
PROSITE profile	PS50090	7.329	36	92	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEGLHHHQYY HRQHHQQQHQ QLAMNVNVDV DRLPQWSIQE TKEFLMIRAE LDPSFMETKR 60 NKQLWEFIST TLKEKGYNRS AEQCKCKWKN LVTRYKGCEM VEEEAKRQQQ FPFYNDLQAI 120 FSARKQTTSK KLCSDEEEDK GRYRGKEKGK KGVSISGSTS ESINDGNDTK EILKCFMRQQ 180 LELEIQWREA LEVRENERRL KEMEWRRTME ALENERVMMD IRWREKEEQR RIREEARSER 240 IDALVTTLLN KLTRDDHMK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468500.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
Swissprot	O80450	1e-53	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A0D2RCJ6	0.0	A0A0D2RCJ6_GOSRA; Uncharacterized protein
STRING	Gorai.002G262900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	4e-49	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G262900.1
Entrez Gene	105786552

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]