PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 26896.2 Da PI: 9.1507

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G244200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	66	119	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Gorai.002G244200.1 66 KKKRLTSDQLDSLEKNFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 119 56679************************************************9 PP
2	HD-ZIP_I/II	117.8	6.2e-38	66	156	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl+++q+ +LE++F+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +L+ l+ Gorai.002G244200.1 66 KKKRLTSDQLDSLEKNFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQEFDAISREKQKLQDEVMKLKGILR 156 9*************************************************************************************97665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-18	59	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	61	121	IPR001356	Homeobox domain
SMART	SM00389	2.7E-16	64	125	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-16	66	119	IPR001356	Homeobox domain
CDD	cd00086	2.64E-15	66	122	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-20	71	120	IPR009057	Homeodomain-like
PRINTS	PR00031	4.0E-5	92	101	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	96	119	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.0E-5	101	117	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.0E-9	121	155	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDWNNTFRPF VSRPEPSLNF LYSNYNYDQY PGMEMKQHQG FMDLGNEMVL PGLNKNSFNN 60 NVNQDKKKRL TSDQLDSLEK NFQEEIKLDP DRKMKLSREL GLQPRQIAVW FQNRRARWKA 120 KQLERLYDSL KQEFDAISRE KQKLQDEVMK LKGILREQVT RNQVSTVYTE ISGEETVEST 180 SIRSSNKPKI AGNNHHPHPV AACNYLFNVD EYNPVSSPYW GTVQLPSYP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX587979	1e-69	JX587979.1 Gossypium hirsutum clone NBRI_GE22268 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468224.1	1e-172	PREDICTED: homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q9LZR0	1e-53	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A0D2MFG1	1e-170	A0A0D2MFG1_GOSRA; Uncharacterized protein
STRING	Gorai.002G244200.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-56	homeobox 51

Link Out ? help Back to Top
Phytozome	Gorai.002G244200.1
Entrez Gene	105786382

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]