PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gorai.002G243900.1

Common Name

B456_002G243900, LOC105786380

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 438aa MW: 49886.3 Da PI: 5.7433

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G243900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5.1e-24	91	198	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++e+ +k Gorai.002G243900.1 91 KWTDNMVRLLIMAVYYIGDDQASSEggnnndpsgkkkggggsggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNEILGK 181 7************9888887766667888999999999************************************************* PP trihelix 71 r.tsessstcpyfdqle 86 + ++e++++ +++++++ Gorai.002G243900.1 182 GtACEVVENQRLLESMD 198 55*********9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.2E-22	89	223	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MLGLEMPLHP QPQQQPQNPQ SVQNPHSLHH QQQHPQVVAY AHHETQHVKQ GYHPFGSKPK 60 QISTISDEDE PGFTLDDGGS KRKASPWQRM KWTDNMVRLL IMAVYYIGDD QASSEGGNNN 120 DPSGKKKGGG GSGGLLQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNEILG 180 KGTACEVVEN QRLLESMDLS PKMKDEVKKL LNSKHLFFRE MCAYHNSCGH VTQEVANETP 240 PQMQQRCLHS SDNAQIGGNP AGGSTETLKL EESDDEDDDD DDDESDGDDD DDDDETMDGH 300 DEDQNVENSS RKRPRKGGVS PSMQQLSNEV TKVIQDGSKN SWEKKHWLKM KLMQLEEQEV 360 SYQCEAFELE KQRLKWVKFS GKKEREMEKS KLENQRKRLE NERMVLIVRQ QELELVDMSD 420 VRQHASNKRG DLSSFTS*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MLGLEMPLHP QPQQQPQNPQ SVQNPHSLHH QQQHPQVVAY AHHETQHVKQ GYHPFGSKPK  60
QISTISDEDE PGFTLDDGGS KRKASPWQRM KWTDNMVRLL IMAVYYIGDD QASSEGGNNN  120
DPSGKKKGGG GSGGLLQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNEILG  180
KGTACEVVEN QRLLESMDLS PKMKDEVKKL LNSKHLFFRE MCAYHNSCGH VTQEVANETP  240
PQMQQRCLHS SDNAQIGGNP AGGSTETLKL EESDDEDDDD DDDESDGDDD DDDDETMDGH  300
DEDQNVENSS RKRPRKGGVS PSMQQLSNEV TKVIQDGSKN SWEKKHWLKM KLMQLEEQEV  360
SYQCEAFELE KQRLKWVKFS GKKEREMEKS KLENQRKRLE NERMVLIVRQ QELELVDMSD  420
VRQHASNKRG DLSSFTS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX623081	0.0	JX623081.1 Gossypium hirsutum clone NBRI_GE70112 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468221.1	0.0	PREDICTED: 46 kDa FK506-binding nuclear protein-like isoform X1
Refseq	XP_012468222.1	0.0	PREDICTED: 46 kDa FK506-binding nuclear protein-like isoform X2
TrEMBL	A0A0D2NSB0	0.0	A0A0D2NSB0_GOSRA; Uncharacterized protein
STRING	Gorai.002G243900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6762	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-104	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.002G243900.1
Entrez Gene	105786380

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]