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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.002G242000.1 |
Common Name | B456_002G242000, LOC105786360 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
Trihelix |
Protein Properties |
Length: 618aa MW: 70698.8 Da PI: 7.5281 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.002G242000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 93.4 | 2.3e-29 | 227 | 312 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +++g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea
Gorai.002G242000.1 227 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEDHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 312
8***********************************99899*****************************98..55667*******85 PP
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2 | trihelix | 46.8 | 7.8e-15 | 491 | 563 | 2 | 83 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
W++ ev Li++++ me g++++ lWeev++km+ gfe+s+ +Ck kwe++ + k k+++kkr +++c y++
Gorai.002G242000.1 491 WQETEVSRLIQLKTTME-----GCSEEILWEEVAAKMACLGFEKSALMCKTKWESIGAYLMKNKDSNKKR----KENCDYYH 563
************99987.....678888****************************************97....56899998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 618 aa
Download sequence Send
to blast |
MCPSVTLSFL LLLLLLHAAI RVFLPPLSFY FVHTSEKYPF FFSLSRTLPQ CHYHCIRTFI 60 HIWDHCPLLQ YSSFFVKDTI PTPLLFLDSL LSSLHYSFHS DMEMENHHHH HHQHHQYGMP 120 DLRQLLNGRP SHFQTVQQGS ELFSSGDRNL PPLQHHHQFD MMQMVGRQVV GHELMPRGGL 180 HHEFSSAAAA TPTAAMAAAV NSGSTPSASC GFEGEAIAFG GDGGTGRWPR QETLTLLEIR 240 SRLDPKFKEA NQKGPLWDEV SRIMCEDHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD 300 GKHYRFFRQL EALYGESSNS VSGHNQFTGN GFGFHGTQNC NIGHSQKLCD SLSLSNSFEF 360 EPSSSDDNDL STEMEINGGS SEKRKKKRSG GGSSKCWKAK IKEFIDLQMR KLMDRQETWL 420 EKLTKTLEEK EKERVLREEQ WRKEEAARIE REQKLWAKER ARIEARDSAL MEALQNLTGK 480 QLKEIVKPDD WQETEVSRLI QLKTTMEGCS EEILWEEVAA KMACLGFEKS ALMCKTKWES 540 IGAYLMKNKD SNKKRKENCD YYHNNNEPLY SDSVSHSNAT AGAAGNGVND SCFRFLMADG 600 ENYWESYGLK LNKGENQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. |
Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |