PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G234700.1 | ||||||||
Common Name | B456_002G234700, LOC105786291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 246aa MW: 27367.2 Da PI: 6.6515 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118 | 3.6e-37 | 13 | 68 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Gorai.002G234700.1 13 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68 58***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-27 | 1 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-31 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MERGWKPRME ISPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRGKS LRLPTDGAQT KSLSCDSFRH SYASTESNSS SSMSDGSHID LALVYANFLS 120 NQQPENKSGF VVPELRTEFD PSLEFSRILN TNMASSIQLP EENGLDLSTE NHLSNNGQIY 180 CSGGNHGLPP LPGDDLPWPN SQSTMSPSLQ ATQEPVLEPE THDPNQLFGN WNPFDLYSDD 240 TFSRT* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468121.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
TrEMBL | A0A0D2MF28 | 0.0 | A0A0D2MF28_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G234700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9141 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 5e-44 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G234700.1 |
Entrez Gene | 105786291 |
Publications ? help Back to Top | |||
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