PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G234300.1 | ||||||||
Common Name | B456_002G234300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 273aa MW: 30499.2 Da PI: 7.0008 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.5 | 7.6e-11 | 14 | 100 | 13 | 90 |
TT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 13 sgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++rl +p ++++ +g+++e + +++de+g +W++ +++rk++++ vl + W +Fv++++L+egD v+++ ++++++ Gorai.002G234300.1 14 NRRLAVPMEYFNMEhfpkpgaslEGNPRE--DFVVKDEKGCVWNLSCSIRKQPNHpkPVLINEWIHFVQSKKLREGDKVIIYGEQDETG 100 56677777775333478888877788777..69****************9999999999999********************8777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-16 | 3 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.97E-11 | 3 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.77E-13 | 3 | 93 | No hit | No description |
Pfam | PF02362 | 1.6E-8 | 14 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MIILEKRLSK TDINRRLAVP MEYFNMEHFP KPGASLEGNP REDFVVKDEK GCVWNLSCSI 60 RKQPNHPKPV LINEWIHFVQ SKKLREGDKV IIYGEQDETG LMQLRIKAEK CTGSYEDPCF 120 PFMNQNPDRN KGLSSHSSSS ESTATFQPSE TEDHSAEYHL ADVLNHELGR ITATTTPSIT 180 KEHIPTNHST SQDIARHKTK GPRLSPSVEL TLKPATTEGM TAGTSSSIDK NLAPTFHSHS 240 QDIGSYNTET PNLSLNLGLT LKPTYMQDTT HK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D2NS15 | 0.0 | A0A0D2NS15_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G234300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22080 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G234300.1 |
Publications ? help Back to Top | |||
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