 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gorai.002G231500.1 |
| Common Name | B456_002G231500, LOC105786253 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
Trihelix |
| Protein Properties |
Length: 476aa MW: 53739.3 Da PI: 9.1907 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.002G231500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 91.1 | 1.2e-28 | 59 | 143 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ + +t+++ dqlea
Gorai.002G231500.1 59 RWPRQETLALLKLRSDMDVTFREASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRSGK--ADGKTYRFCDQLEA 143
8********************************************************************96..56668******985 PP
|
| 2 | trihelix | 102.6 | 2.9e-32 | 316 | 400 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k e+ aLi++r+++++++++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++k+r + +s+tcpyf+ql+
Gorai.002G231500.1 316 RWPKVEIEALIKIRTSLDSKYQDNSPKGPLWEEISNGMKKLGYNRNAKRCKEKWENINKYFKKVKESNKQR-PVDSKTCPYFHQLD 400
8*********************************************************************8.9999********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 476 aa
Download sequence Send
to blast |
MLGGGGTTAS VSSGGGCNGS NEAAAPVAVF DTNDGNSNNS GKDDRSKVDE GDRSFGGNRW 60
PRQETLALLK LRSDMDVTFR EASVKGPLWE EVSRKLAELG YHRSAKKCKE KFENVYKYHK 120
RTKDGRSGKA DGKTYRFCDQ LEAFQNQPSI QWPPPPPVAA AATINQSISA VQMSNSTSSS 180
TSSDLELQGR KKRKRKWKDF FERLMKEVIQ KQQVMQKTFL EAIEKHERER IVRDEAWKVQ 240
EMSRLNRERE ILAQERSIAA AKDAAIMAFL QKLSEKQNLG QSQNSPLPPP AVVPAAVAPP 300
PDNGNQIQTH TPSSSRWPKV EIEALIKIRT SLDSKYQDNS PKGPLWEEIS NGMKKLGYNR 360
NAKRCKEKWE NINKYFKKVK ESNKQRPVDS KTCPYFHQLD VLYREKNKHD CSSKSNPLMV 420
RPEKQWPPPL EPHQQHHDTI MEDMMESDQN DDEEEDEGGS YELVASKPVS MGTAE*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 189 | 194 | RKKRKR |
| 2 | 189 | 195 | RKKRKRK |
| 3 | 190 | 195 | KKRKRK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ013092 | 0.0 | JQ013092.1 Gossypium hirsutum trihelix transcription factor (GT7) mRNA, complete cds. |
