PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G230400.1
Common NameB456_002G230400, LOC105786241
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 254aa    MW: 28280.2 Da    PI: 8.4993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G230400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097188210223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp C   Fs+   L+ H ++ H
  Gorai.002G230400.1 188 ECPQCRVKFSSVTALVEHVKKvH 210
                         5*******************999 PP
2zf-C2H218.84.5e-06225247223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp+Cg+ F+++ +L+ H  + H
  Gorai.002G230400.1 225 VCPKCGRGFRDPVSLVEHVEKdH 247
                         7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.01E-12650No hitNo description
PROSITE profilePS510397.261059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.5E-101152IPR000058Zinc finger, AN1-type
SMARTSM001540.0291352IPR000058Zinc finger, AN1-type
PfamPF014289.6E-131350IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.7E-1191145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.71E-993144No hitNo description
PROSITE profilePS510397.75198146IPR000058Zinc finger, AN1-type
SMARTSM001540.051101142IPR000058Zinc finger, AN1-type
PfamPF014288.0E-8101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.099187215IPR007087Zinc finger, C2H2
SMARTSM003550.018187210IPR015880Zinc finger, C2H2-like
PfamPF138940.0011188210No hitNo description
SuperFamilySSF576677.87E-5188243No hitNo description
PROSITE patternPS000280189210IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577224252IPR007087Zinc finger, C2H2
SMARTSM003554.3224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGTPEFPDLG RHCSVQHCKQ IDFLPFTCDR CDLSYCLEHR SYIKHQCSKA GNNDVTVVIC  60
PLCAKGVRLI PNEDPNISWE NHVNTECDPS NYDKVTKKKK CPVRRCKEVL TFSNTIKCKD  120
CSVDHCLKHR FGLDHDCPGP KKPATTSSSF WATSLLNVAS SFRENRQVAR DGAGLRRSSS  180
GSAGQMEECP QCRVKFSSVT ALVEHVKKVH ERNSQSRVLK MSIDVCPKCG RGFRDPVSLV  240
EHVEKDHGGT SKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431270.0AC243127.1 Gossypium raimondii clone GR__Ba0222F01-hob, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468050.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
RefseqXP_016732404.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ8VZ421e-113SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0D2RB590.0A0A0D2RB59_GOSRA; Uncharacterized protein
TrEMBLA0A1U8N3I80.0A0A1U8N3I8_GOSHI; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
STRINGGorai.002G230400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]