PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G228900.1
Common NameB456_002G228900, LOC105786226
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 347aa    MW: 37925.2 Da    PI: 8.8247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G228900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.3e-13274319655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Gorai.002G228900.1 274 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 319
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16271334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-12272321No hitNo description
Gene3DG3DSA:4.10.280.107.0E-15273330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDSSTHQSYQ NQNNQSNSGL LRFRSAPSSL LATVDCGVNK GGFESRFINS SSGGDNETED  60
KSGLEAAVNY ANSAPTYSGL PPQYPRQSSA MDNSYELLGL NHHSQGKPVT SSLMRQSSSP  120
PGLFTNLSVQ NGFSGMKGLG NYCGVNGTSG ELSPSSNRLK NQISFSSRQP SSLGILSQIS  180
EIENENLGAN SFDGGKPEYQ CGSWNESAQL TEKHKLFTNN QNGDIGSGVH VLPRHLSLPK  240
TSNEMAVMEK YLQFQDSVPC KIRAKRGCAT HPRSIAERVR RTRISERMRK LQELVPNMDK  300
QTNTADMLDL AVEYIKDLQK QFKTLSDSRA NCKCLNTQKT VPNQIL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468022.10.0PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR31e-100BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0D2MEP40.0A0A0D2MEP4_GOSRA; Uncharacterized protein
STRINGGorai.002G228900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]