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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.002G218400.1 |
Common Name | B456_002G218400, LOC105786119 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
CO-like |
Protein Properties |
Length: 422aa MW: 46533.5 Da PI: 7.6159 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.002G218400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 30.4 | 7.8e-10 | 17 | 59 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
r C+ + +k+++++C ++ +lC+ C ++ H+ H++v
Gorai.002G218400.1 17 RACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHKRV 59
78*****************************668888889887 PP
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2 | CCT | 68.1 | 2.4e-23 | 365 | 408 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
Gorai.002G218400.1 365 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 408
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 422 aa
Download sequence Send
to blast |
MISSKKMANA VGAKTVRACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHKRVR 60 LKTASVKSSG DELPLESFSP SWDRGFTRKA RTRRPVKGSI HRKPLKAKNN PVPVVPEVGI 120 DEIFNEENEE EQLLYRVPIF DPFVAELCTS TTSTEAAVSA VGNEAETAAT ESKAFMGQDV 180 DGSHGLFPSE MDLAEFAADV ESLLGKGLEN ESFTMVELGL TGSKDLREYS YGNGQVKIED 240 EESFEGGMAR EPFELSFNYD SPPSCGGVDE LVKEEVEVKS KEGGECQENT AKKKKRKTLL 300 SLDYEAVITA WATQGSPWTS GGKPDLDPDE CWPDCMGNGG TEVQQSYSGL MGMGGQQQAM 360 GDGGREARVS RYREKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRASF LTGPAFPLLN 420 K*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 291 | 296 | KKKKRK |
2 | 375 | 391 | RRTRLFSKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JQ618335 | 0.0 | JQ618335.1 Gossypium hirsutum constans-like protein 5 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 4e-95 | B-box type zinc finger protein with CCT domain |