PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G214700.5
Common NameB456_002G214700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 328aa    MW: 37413.4 Da    PI: 6.2335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G214700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000433355323
                        ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                        C+   Cgk+F +   L++H   H
  Gorai.002G214700.5 33 CSyeGCGKTFIDAGALRKHSHIH 55
                        77779**************7766 PP
2zf-C2H217.51.2e-056084123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        y+C+   Cgk F ++s LkrH   H
  Gorai.002G214700.5 60 YVCHweGCGKKFLDSSKLKRHFLIH 84
                        9********************8877 PP
3zf-C2H220.99.3e-0790114123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp   Cgk Fs   nL++H++tH
  Gorai.002G214700.5  90 FICPheGCGKAFSLDFNLRSHMKTH 114
                         78**********************9 PP
4zf-C2H2188e-06120144123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp  dCgk++ + + Lk+Hi +H
  Gorai.002G214700.5 120 HICPypDCGKRYAHEYKLKNHIASH 144
                         679999*****************96 PP
5zf-C2H214.10.00014183208123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y Cp   C k + + + Lk H+r+ H
  Gorai.002G214700.5 183 YACPyeGCEKAYIHEYKLKLHLRReH 208
                         89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-142657IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7833160IPR007087Zinc finger, C2H2
SMARTSM003550.00323155IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803355IPR007087Zinc finger, C2H2
SuperFamilySSF576673.16E-83484No hitNo description
Gene3DG3DSA:3.30.160.601.5E-145880IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.9216089IPR007087Zinc finger, C2H2
SMARTSM003550.00116084IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806284IPR007087Zinc finger, C2H2
SuperFamilySSF576674.89E-1375117No hitNo description
Gene3DG3DSA:3.30.160.604.9E-2081114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.59190119IPR007087Zinc finger, C2H2
SMARTSM003553.9E-490114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576672.43E-8105146No hitNo description
Gene3DG3DSA:3.30.160.602.8E-9115146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.494120149IPR007087Zinc finger, C2H2
SMARTSM003550.0028120144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-5178206No hitNo description
Gene3DG3DSA:3.30.160.603.1E-9178206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.972183213IPR007087Zinc finger, C2H2
SMARTSM003550.0089183208IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVKNTLKALN DKEKEPEAPE PEPEPTTEVL FLCSYEGCGK TFIDAGALRK HSHIHGERQY  60
VCHWEGCGKK FLDSSKLKRH FLIHTGERDF ICPHEGCGKA FSLDFNLRSH MKTHSQENYH  120
ICPYPDCGKR YAHEYKLKNH IASHHEKNTT PEVAKYAPPL EKIVKTPKPT GGAYGSASSD  180
RPYACPYEGC EKAYIHEYKL KLHLRREHPG HMSDENAENA TANVDNEMDE ASDQDAYAGK  240
RVNGKSQKQQ SRAKPNLKMP PAKVARQKGS SPSPATLPIP KKQWPIKEQV FEEEDSEETE  300
EDRDNVDDGW RYRENNEDDD EETEYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-35331448119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467798.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467799.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467801.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467802.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-135YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0D2ME520.0A0A0D2ME52_GOSRA; Uncharacterized protein
STRINGGorai.002G214700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-133C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]