PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G206600.1

Common Name

B456_002G206600, LOC105785992

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 296aa MW: 32783.2 Da PI: 8.3759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G206600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F ++ L H +H Gorai.002G206600.1 170 FECSSCKKVFASHQALGGHWASH 192 89*************99999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.02	71	93	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.598	71	98	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.3E-7	71	95	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.64E-7	72	93	No hit	No description
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.64E-7	165	192	No hit	No description
Pfam	PF13912	3.9E-8	169	193	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.58	170	192	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.014	170	197	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	192	IPR007087	Zinc finger, C2H2
SMART	SM00355	6.1	225	247	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.5E-8	225	249	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.787	225	252	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	227	247	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MNENIDSDHG FRFLSSVTQH NVTVNYDPKP RKKRTKVVKV DVGQFPTCSS TTVSRPKYTK 60 KPDPAAPKIT RPCTECGKKF WSWKALFGHM RCHPERQWRG INPPPNYCRP VKPASNVETL 120 MTEDDHEIAA SLLMLANGST ASESECGTSY RPGVQETEAF SQHLGTNIRF ECSSCKKVFA 180 SHQALGGHWA SHKNVKGCFA ITRSEGYDVK DHSCDEDKMM MVLGHKCSIC WKLLSSGQAL 240 GGHKRYHWGK GDDEASSLNL LTAKEDCGLD LNLPPAPLQN DSYPSGLALD LRLSL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269\|PubMed:24876252}.
Uniprot	TISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269\|PubMed:24876252}.

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the regulation of male germ cell division by DUO1. {ECO:0000269\|PubMed:24876252}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269\|PubMed:21285328}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467663.1	0.0	PREDICTED: zinc finger protein ZAT3-like
Swissprot	O65499	1e-78	ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBL	A0A0D2Q9Q5	0.0	A0A0D2Q9Q5_GOSRA; Uncharacterized protein
STRING	Gorai.002G206600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4619	18	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	3e-77	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.002G206600.1
Entrez Gene	105785992

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]