PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 374aa MW: 42714.4 Da PI: 6.7542

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G190600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.1	3.2e-25	55	136	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +r+em+ r++++k++k+lWe++s+ mr++gf rsp++C++kw+nl k++kk k+ +++ s+s+ ++ y++++e Gorai.002G190600.1 55 WVQDETRSLIGFRKEMDGRFNTSKSNKHLWEKISAMMRKKGFDRSPTMCTDKWRNLLKEFKKAKHPDRG--SGSV-KMCYYKEIE 136 *****************************************************************9998..5666.566999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-4	45	116	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.269	47	111	IPR017877	Myb-like domain
SMART	SM00717	2.6E-4	51	113	IPR001005	SANT/Myb domain
CDD	cd12203	8.48E-28	53	118	No hit	No description
Pfam	PF13837	1.4E-19	54	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MARDMIIEVT TNGGFPDHLH HHHPHSLQQQ QQMILGESSG DDPEVKAPKK RAETWVQDET 60 RSLIGFRKEM DGRFNTSKSN KHLWEKISAM MRKKGFDRSP TMCTDKWRNL LKEFKKAKHP 120 DRGSGSVKMC YYKEIEEILR ERTQKSYKAP TPPPKLDSFM HFSDKGLCFE DTSITFGPLE 180 GMLLLLLPSG RPALNIEQGL DYDGHPLAIT TANAVAASGV PPWNWRETPG NGGDCLPYGG 240 RVITVKYGDY TQRIGIDGTT EAIREAIKSA FRLRTKRAFW LEDEDHIVRS LDREMPLGNY 300 KLHLDEGLAV KVCLYDESDH IPVHTEEKIF YTEDDYREYL VLRGYAGLRE IDGYRNIDSM 360 DDLQTNTIYR GVS*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MARDMIIEVT TNGGFPDHLH HHHPHSLQQQ QQMILGESSG DDPEVKAPKK RAETWVQDET  60
RSLIGFRKEM DGRFNTSKSN KHLWEKISAM MRKKGFDRSP TMCTDKWRNL LKEFKKAKHP  120
DRGSGSVKMC YYKEIEEILR ERTQKSYKAP TPPPKLDSFM HFSDKGLCFE DTSITFGPLE  180
GMLLLLLPSG RPALNIEQGL DYDGHPLAIT TANAVAASGV PPWNWRETPG NGGDCLPYGG  240
RVITVKYGDY TQRIGIDGTT EAIREAIKSA FRLRTKRAFW LEDEDHIVRS LDREMPLGNY  300
KLHLDEGLAV KVCLYDESDH IPVHTEEKIF YTEDDYREYL VLRGYAGLRE IDGYRNIDSM  360
DDLQTNTIYR GVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-46	49	134	1	86	DNA binding protein GT-1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467487.1	0.0	PREDICTED: trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	1e-179	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1U8KXS8	0.0	A0A1U8KXS8_GOSHI; trihelix transcription factor GT-1-like isoform X2
STRING	Gorai.002G190600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-171	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G190600.1

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]